RNA id: TU152216


Basic Information

Item Value
RNA id TU152216
length 262
lncRNA type inter_gene
GC content 0.59
exon number 1
gene id G121445
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 6413013 ~ 6413274 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cctgtattgtgtgtgtgtaccgtTGGCTCTGGCTCCCTCCACGTCATCCTTAAAGAGCTCTTCGGTGCCGAACTTCAGGATGtcgtccagctcctgcttggaCATGGAGCCGGTCTTGGAGCCCAAGCCGGGCCGCACCACCAGGTGGGTCAGCATCATCTTGCGCTTGGCCACCTGGGTGATGCGCTCCTCCACCGAGGCCCGTGTCACGAAGCGGTAGATCATCACCTTCTTATTCTGACCGATACGATGGGCCCTACTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152215 lncRNA downstream 5098 6407705 ~ 6407915 (-) True G121444
TU152207 lncRNA downstream 27094 6382433 ~ 6385919 (-) True G121443
TU152212 lncRNA downstream 27094 6382433 ~ 6385919 (-) False G121443
TU152214 lncRNA downstream 27094 6382433 ~ 6385919 (-) False G121443
TU152160 lncRNA downstream 135111 6277468 ~ 6277902 (-) True G121403
TU152218 lncRNA upstream 6767 6420041 ~ 6424298 (-) True G121447
TU152525 lncRNA upstream 1147803 7561077 ~ 7562747 (-) True G121689
TU152556 lncRNA upstream 1244558 7657832 ~ 7658851 (-) True G121716
TU152558 lncRNA upstream 1249712 7662986 ~ 7663677 (-) True G121718
TU152604 lncRNA upstream 1416919 7830193 ~ 7845316 (-) True G121754
AMCG00002185 mRNA downstream 31582 6357657 ~ 6381431 (-) True AMCG00002185
AMCG00002178 mRNA downstream 150708 6258047 ~ 6262305 (-) True AMCG00002178
AMCG00002177 mRNA downstream 165144 6247266 ~ 6247869 (-) True AMCG00002177
AMCG00002172 mRNA downstream 304529 6106190 ~ 6108484 (-) True AMCG00002172
AMCG00002173 mRNA downstream 327061 6033844 ~ 6085952 (-) True AMCG00002173
AMCG00002187 mRNA upstream 15091 6428365 ~ 6447619 (-) True AMCG00002187
AMCG00002191 mRNA upstream 38000 6451274 ~ 6500272 (-) True AMCG00002191
AMCG00002193 mRNA upstream 252840 6666114 ~ 6667451 (-) True AMCG00002193
AMCG00002198 mRNA upstream 269758 6683032 ~ 6706524 (-) True AMCG00002198
AMCG00002196 mRNA upstream 299723 6712997 ~ 6713197 (-) True AMCG00002196
TU151612 other downstream 2193136 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 2626469 3784236 ~ 3786544 (-) True G120927
TU151499 other downstream 2696761 3713867 ~ 3716252 (-) True G120907
TU151364 other downstream 3285069 3113442 ~ 3127944 (-) True AMCG00002094
TU151301 other downstream 3408096 2995508 ~ 3004917 (-) True G120748
TU152605 other upstream 1423221 7836495 ~ 7839411 (-) True AMCG00002223
TU153137 other upstream 3418637 9831911 ~ 9833224 (-) True AMCG00002276
TU153139 other upstream 3428821 9842095 ~ 9853075 (-) False AMCG00002279
TU153575 other upstream 5111619 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 5254481 11667755 ~ 11685089 (-) False AMCG00002327

Expression Profile