RNA id: TU152218


Basic Information

Item Value
RNA id TU152218
length 4258
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G121447
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 6420041 ~ 6424298 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttgattattttaatacatttagaacTGTGGGTACATTGACATATTGCAGAGACTTATTTAGAACGTACAATCTAGCGGCTTCAAAGTACAAACTTCAATCCAATGCAGTTGTCCAGCGGGACTAAACCTACATGGACTCCATCACTGACTCTGTGCTCCACCGTGGGTCAACCAGGCGCACGAGAAACTCATCAGCCACTTTCGCTTTCTTACTGAGagaatttattaaaacacattaaacaaatacacacgGTACAAAGTAAGAGATgaccatttttcattttttcctttcatttgttttcctttacaaaTGCACATATCCTAACACTGGTCAAGTTTGtcatatttgttgttatttcttatatatatatatatatatatatatgtatacatatatatatatgtgtgtgtatatgtatacatacatactgtatatttatttttcattatgaaccttcatacaaaacatttccacatGCTGtgcatacatttctaaaaaagaGACATCTTTACCAGGGTTTCTTCTGAGAGCTTTTGAAGcttttgttattcatatatatatatttataatattagaCTGAAgcctttttcattatatatatatttgtttgcactGCTGTATTCAGACAGTGCAATACTTGTTACATTCTGGTGAGCTTCAGTTtgattgcatttctttcttttcttttgttttgtacatttgcagtttatttttatttatagttcCTTCTTTCTGGCACTTCTAAAGAAAACGAACACTGACTCAAAGAAAAAGGAACAGATCTAGTGACTCCAACCCAGTTAAGACACGGTACAGTAGTCGCTTTAAAGAAACTACTCTGCATTGTCAGAAGTCTAGAAGGATTAAAGTAGTCGTCTCAGTTGCTCCCACACACAGAATGCAGTTCTGAACATGCAAAACAGTCATCAGGGAATATATCCTGTATTTGTATGATTCTACAGGTTTTGCAGTTTTCCTACTACTGTATAACAAATGACTGTTCTGCAAATACTATGTTAacaagtgttttgtttagtttttctctctgcTGTTGCCTATTTTAAGAACGCGCAACCTGTCTGCAAAGCCTTGCTGGGACCGACTGTGTAGTTCTGGACTGTACTGTCTGAAGATGCTACATATCTGAGAGTTTGTcatgaaaagcaaagaaaattagtccaataaataaaacagtatgcACAAACAAAGCCACTCATATTTACACTaacaaatattgtttcaaagtatataaattaaatttaaaaaaaatacaaacataggGCCAATAACCTCACAGTTACACAACATCATCAGAAAACACTTCTTAAAACAACATGAAGACACAGAACAAGGAGTAGCTGCTTTAGAAGAACTGAGTACtccacagcagagagagaggggtacgTAGGTGATGGTTTGTGCCAGTTGTCATGTGTTTGTCTGAATGGGTCGACATTTACCTTTGTAAACAGAATGTGTAGCGTTTATAGCCTTCACTCAACACAGGAGAGCTTTGCCTTTCAGTTATTAAAGTGCTTCATCAGCGTAAACACACCCTCTACACAGGAATACACACTGTGGTGCATAAAAGGCGATGTACCAAATGGATTTTGAATACAACGTAGTGGACTACTTTACTTCCTCACACAGCCACGGGATTGTTTGAAGTATGTGATCTATAGGTGCCTAAGTGAGGCCCAATTCTCTTTTAATTCCAGCAAGTCTTGTTTTCTTGCCTGAAAGTGAATTCTCCTGCACGAAAGAGAAATGAACACTGTGAGTAACCAATATTTCTAAAACAGGGCATTTATACTTATTTGCAATAGCCAGGTAAATTGGGCCGAACATGTGGCCCTTTCTATGATATGTTTAAACACATATGTACATAAAAACAGCCAGCATTTGGTGTCTCTCAAAGACACAAACAGGTAGTTTCATATTGAATCCAGTCCTTGGGCTTGAgaccagctgcagcagcagtctgccaagaaataaacaataataacagggAACGCTTTCTTCAACAGCTATATTTGCTCTTCGTTAGACTCAAGGCTTCCTGAATCACATAAAGCAGCCACTGCCTGTGCCGTGTCTACCTTTCGTCCAGCCCAAATATAAAGACACGGTGAAAAAGCAGACCCCTTGCCTTTTAGGgtaacaaaaacagttcaagAAAAAGATCATCTGTACCAACGCCTACAGTTTCCTCGATGCTTCAAACAGTAAGGTGCTCTGCAACACTATCTCCCTTcccctcacaaacacacacgcctAATGTAACACAACTTCAACAATTCCAACAACTCGTGTTAAATGACATTACAATGTACGCCTCTGTGTACATACAGTTCCTTTGAGAGTCATCTGATTTCCTTTTCAGTTCCTTAAGAATAAAGAGTGCTTCTCCAAAATGGCagcaaaggaaaacataaaagttaaaaaacaacaacagcaacaacaggaaTAGAGAACATTCAGAGGTGTTGACTGAGGAGGTATCTTCTCCACGGAGTTAAAATGACTTTGCATTTCTTGTATCTCAACTTAGAAAAGATGTAGAGTGCACGGAGTTAAGGTTATCATTAAGACCGGCGCAATCCAAAGCTCGGGGTGGTTTTATGATTGGATCGCGTTTGAACTTTTCTTCCGTCGTCCTTCGAAACTTTTGGTTACGTATGAATGTGCCTAGAGACAGTCAAACCAGAAGGGAGACTTTCAAAGGGCTCCACACTGGCTTGCGGCTCCGAAACGAGAGTGAGAAATCAGTGCCAGGTTACGGGCACCCCGCGATCCAGGACTTCGGCACAACACCATCGCACGGGCAGCGTTAGAGAATACTTTAAAAGACCACAGTTTTGCCGTACAACCAAGAATTGTCCCAAACAGGCTTTTCATTTACTGAGCCcaggtataaaaaaaacaaatggtcaaaaacacttttgagtgcacttttttttttgtccctttCTGTCTAGTCTcctagatatatatatatatgtatgtatatatgttaaaattcttcctttctttctgatttccccatacaatattaaataaagattatgAAGTCTCTGTACAatagtgtttttaaatcttGGTAGCTTTTAAATGTCGGAGCTGTGTGTGTACACTGAGATCTGACTTCCTCATCTTTCCAAGAAAGCTATGCCAAAAGCCAGGGTGCACTACAGCAGCTGTCCTGTACAAGAGTCTTGAGAGATGTCTACGCAAAGATGTGTTTCTCTAGGAGTGGCTAGGAAACCCCTTCAACATCCCAGAAAATGCCCATACTCCTTTAAGCTATagttacagaataaaatactttaaaaatatattatgagcTGATCCCGTTGCTGCTCTTCTGTATCAGGAACGATGCCTGACCTCGTATGCTGTTTGTATGGCTAAGCAATTGCATTCTGTACATCGGCTGGATATCTGAAGAAGCCGCAGGGGGTCTAAGCAGGAGGAGTCTACGGTCGGGGGTAGGCGAGTGCAGGTGCCCTTTGGAGACCCCAAGGGAGTGTGAAGATTCCAGGTTTGACGCACACAAGGTTCGATTGTATAGTGCGTAATCCACTGCCAGAGAAAGAGATGGGGATTGCGGGTgttgtgttggggggggggacatAATCCTCCCCAACTTCGAATCTTACAGGTTTTAAATGGTAGGTTGTCGTCTAGCTAAAGGATAAACATCATTAAGACTGCAGCCAAGGCATAAAAGAGAAGAAACTTCCCAGACAAAAGGAAGGACACTCCGGCACGGCCATACTGAAATGTCCGAGACAAGGTTCCCCAGTCCTGTTGAGTCAGCGTGAAGCGTGGGAGAGACAGATAAGAAGCTGAGGGCACGGCCAGGTCTCACTTCAGAACCTCCTGCTTTGACGTCCAACTGTCTGGCTTGCCCCGAACCCGTGACCTTCCTCATGAACGTAAGACAGAAGCGAAGACACAGGTGGCCAGCAGGGTATGTACTGCATGGGAGGGACCCCCCAGTTAGGCTGTGTCCTAGGGAGGGGAACAAGTGCAATCGATAAGATGTGTTTCTCAGTTTAATGGGAGCTCTTTCCAAAAGGATGCTTCGTCTCTGTCGTTTCCCACACTGCGGGAAGGGGGCAGCGGGGGGCTAGTCCTCGATACAGATGACATCGCTGGGCTTGCCCGTCTTGTGCTCTGCGGCGGTGAGCTCCTTCAGGGGGTCGCTGGGTTTCTTGTCCAGGTGGCTGGAGGGAGGCGGGGGGCCATTGCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152216 lncRNA downstream 6767 6413013 ~ 6413274 (-) True G121445
TU152215 lncRNA downstream 12126 6407705 ~ 6407915 (-) True G121444
TU152207 lncRNA downstream 34122 6382433 ~ 6385919 (-) True G121443
TU152212 lncRNA downstream 34122 6382433 ~ 6385919 (-) False G121443
TU152214 lncRNA downstream 34122 6382433 ~ 6385919 (-) False G121443
TU152525 lncRNA upstream 1136779 7561077 ~ 7562747 (-) True G121689
TU152556 lncRNA upstream 1233534 7657832 ~ 7658851 (-) True G121716
TU152558 lncRNA upstream 1238688 7662986 ~ 7663677 (-) True G121718
TU152604 lncRNA upstream 1405895 7830193 ~ 7845316 (-) True G121754
TU152667 lncRNA upstream 1591766 8016064 ~ 8017075 (-) True G121789
AMCG00002185 mRNA downstream 38610 6357657 ~ 6381431 (-) True AMCG00002185
AMCG00002178 mRNA downstream 157736 6258047 ~ 6262305 (-) True AMCG00002178
AMCG00002177 mRNA downstream 172172 6247266 ~ 6247869 (-) True AMCG00002177
AMCG00002172 mRNA downstream 311557 6106190 ~ 6108484 (-) True AMCG00002172
AMCG00002173 mRNA downstream 334089 6033844 ~ 6085952 (-) True AMCG00002173
AMCG00002187 mRNA upstream 4067 6428365 ~ 6447619 (-) True AMCG00002187
AMCG00002191 mRNA upstream 26976 6451274 ~ 6500272 (-) True AMCG00002191
AMCG00002193 mRNA upstream 241816 6666114 ~ 6667451 (-) True AMCG00002193
AMCG00002198 mRNA upstream 258734 6683032 ~ 6706524 (-) True AMCG00002198
AMCG00002196 mRNA upstream 288699 6712997 ~ 6713197 (-) True AMCG00002196
TU151612 other downstream 2200164 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 2633497 3784236 ~ 3786544 (-) True G120927
TU151499 other downstream 2703789 3713867 ~ 3716252 (-) True G120907
TU151364 other downstream 3292097 3113442 ~ 3127944 (-) True AMCG00002094
TU151301 other downstream 3415124 2995508 ~ 3004917 (-) True G120748
TU152605 other upstream 1412197 7836495 ~ 7839411 (-) True AMCG00002223
TU153137 other upstream 3407613 9831911 ~ 9833224 (-) True AMCG00002276
TU153139 other upstream 3417797 9842095 ~ 9853075 (-) False AMCG00002279
TU153575 other upstream 5100595 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 5243457 11667755 ~ 11685089 (-) False AMCG00002327

Expression Profile