RNA id: TU152525


Basic Information

Item Value
RNA id TU152525
length 1671
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G121689
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 7561077 ~ 7562747 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTTCAAATACAATGCTGGATAACCTCAAGTGCCTGAAATTGGGCATAAGGTTTCCAGACTAGGGAAAAACGAAGTTGTCAAACTATTTTCCTTTGAGCAGGTTCTTGGCTTTGCCGGCCTCTAAGATGCCTCATATGATCTAGGGCCAGCTAGATGACGTCTAATTTGCCGTGTAAATTGTTTTGTAGATCAAGTGGCATCTTCTTCATACCCTCACTGTGCGTCTCCATTCAGTATTTGTGGGTCCTTCTGTGCTCCCTTACAAGATCAAGGCAGGTTCTGATAAACGAACCCTCTGCTAGGAATGAATATGATTATTGGTCTTTCCCTTTTTCATTTGGTggtttgtttaaacaaacactATAGGATGCTATAAAATTATTCATTCACTccccacaataaataaataaataaataaataaaagtattaccATATCTATGTTAAAACTAAAGTTTTGGCCTTATTATAGATATGGAAGCCCATCTCTTATCAAATGTGGAGCTTCAAAAACAATCAAGAGGGCATTAAATCAAGTTCAAGTAGCGTTTCTTTCACAGCGGTGCATCTTGGCGGCTCAGGAggtgtttattttctgcattctTGTAGTTGCACAGAAGAATGAAATGGGTGTTAAAAGGTTTTAGTCGTTCATTTAcactaaaatgaaacattacatttagtttcctttactaaagttttttttgttccagaAGAAAGGGAGAAGAGGTGATGATGGGCTCTTGACTCTCCCAttttcaaaactattttgtttgtatgtttagtTAATTCATtactctctacacacacacaaatactcaAATACGTTTTCTAAATGGAAGACAAGACAAGAGCAATAACAGTGAATATTAACAGATATTTCTTCACAAACAAAGCTAGccagtgtaaaaaaatattataaaataaaaaaaaatacaaatttacacatgtaaataatttttcattttacactattgtattataaatgtatatggtgTTTACTTTTTTCAAAAAAGAAATCTTTTCTTACACAATAGCTGTCTTGTTTTATGAGTTGTGTTTTAACATagagaaaatgtttcaaaaacaattattgcaGTGCGTTAGTGGATATTCCCTacataatcatgtttttttttttttttccattattttacttatttttttcactgtagaatctttttattatatgattctttttttttttcaccagaccatatattttttaatgttataagAAATTCCTGAAATAAAGTACATTTGGTCAAAAATGGTCACACAACAgtttcaaaaaatgaaaagtacaaACACCTCACCACAGATCATTTCTCATTATCATATACCTTTTAGCCCTACGCTGCTGCTATTAGTATATAAACTTTCCGATTCTAGAACTATTTTTATGTAAGAGATAAATGTATGCTTTCTTGTTTATTAATGCCGCAAATACGAAAAAAGCTTGgcttatttatctattttgcCCTTTACCTTGTCTTCTTTGCGCCTTTTCCACCCCCTTccccaccacctcccccccCTCTGTCACGACACAGactatattgtaaaataaaggaCTTTATGAGATTATGTTTGAAAATAGCTATGCTTATATACCACAGTGACTGAATGTACAGTGTATAGATGCATTACCAGAAATAAAGTTGTTTGTCCa

Function

GO:

id name namespace
GO:0071310 cellular response to organic substance biological_process
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0042221 response to chemical biological_process
GO:0044344 cellular response to fibroblast growth factor stimulus biological_process
GO:0071774 response to fibroblast growth factor biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152218 lncRNA downstream 1136779 6420041 ~ 6424298 (-) True G121447
TU152216 lncRNA downstream 1147803 6413013 ~ 6413274 (-) True G121445
TU152215 lncRNA downstream 1153162 6407705 ~ 6407915 (-) True G121444
TU152207 lncRNA downstream 1175158 6382433 ~ 6385919 (-) True G121443
TU152556 lncRNA upstream 95085 7657832 ~ 7658851 (-) True G121716
TU152558 lncRNA upstream 100239 7662986 ~ 7663677 (-) True G121718
TU152604 lncRNA upstream 267446 7830193 ~ 7845316 (-) True G121754
TU152667 lncRNA upstream 453317 8016064 ~ 8017075 (-) True G121789
TU152800 lncRNA upstream 1262684 8825431 ~ 8859003 (-) True G121875
AMCG00002212 mRNA downstream 348113 7210266 ~ 7212964 (-) True AMCG00002212
AMCG00002210 mRNA downstream 383093 7165097 ~ 7177984 (-) True AMCG00002210
AMCG00002209 mRNA downstream 451896 7090840 ~ 7109181 (-) True AMCG00002209
AMCG00002208 mRNA downstream 474664 7075749 ~ 7086413 (-) True AMCG00002208
AMCG00002201 mRNA downstream 621532 6923998 ~ 6939545 (-) True AMCG00002201
AMCG00002219 mRNA upstream 2652 7565399 ~ 7582098 (-) True AMCG00002219
AMCG00002218 mRNA upstream 83908 7646655 ~ 7647629 (-) True AMCG00002218
AMCG00002221 mRNA upstream 129213 7691960 ~ 7719401 (-) True AMCG00002221
AMCG00002220 mRNA upstream 233976 7796723 ~ 7800503 (-) True AMCG00002220
AMCG00002222 mRNA upstream 257765 7820512 ~ 7826557 (-) True AMCG00002222
TU151612 other downstream 3341200 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 3774533 3784236 ~ 3786544 (-) True G120927
TU151499 other downstream 3844825 3713867 ~ 3716252 (-) True G120907
TU151364 other downstream 4433133 3113442 ~ 3127944 (-) True AMCG00002094
TU151301 other downstream 4556160 2995508 ~ 3004917 (-) True G120748
TU152605 other upstream 273748 7836495 ~ 7839411 (-) True AMCG00002223
TU153137 other upstream 2269164 9831911 ~ 9833224 (-) True AMCG00002276
TU153139 other upstream 2279348 9842095 ~ 9853075 (-) False AMCG00002279
TU153575 other upstream 3962146 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 4105008 11667755 ~ 11685089 (-) False AMCG00002327

Expression Profile