RNA id: TU152556


Basic Information

Item Value
RNA id TU152556
length 1020
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G121716
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 7657832 ~ 7658851 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTGGAGTGACTTACTTCCCCGACGCGGCTGCCGGGCCGCCCTCCCCGGTATCGCGACAGCTCGGTCTGCCCGGCGCGCTGCTCTCTCCCGGGGCGCCCGTGTCACCGCCGCCGGGGTCTCGGCCATCTTTTGCAACTTGAAAatagtgtttctttcttttcagtttcaactTCGCGGGCTTTTCCTGGGACATGTTCGCAGTGGTTATCTGAAGTGGACAGAACCAGCCAGGCAAGCATTCATGCAGAATGAGCGAACTTACTGCCAGGAAGGtagctgttttcttttgttgtgaCTCTGCAAATACGACGAACATCTCTTCAGCAACATAATTAACGATGTAAACCGATTAGTTATTGCGTGTATCTGTCTTGGATCAAGCATGAGCTATTCCTGCCCACTGTCACTGAACAATATAGTACACACTTGATTTTGGCGCTGCGGAATGACAAAGCGGAAATGGATGCATAATATTCAATCGGATTGGTCGCggtcgtgtagcgcagatctgcagatcccagcgatcccattggcggagccgcgcagCGCTGCTGACATCTGCGCCACAGCGACCTTATGCTACAGTAGTGAAGACACATGAGGCGGACACCAATTGCCCTCAACGCAGGGAGACTTTTAGACTTACCCCCaaaataagtttacattttcaaatgaatacgTCTTAGCTATTTACTACTGCATATCCAAATATTACATGAATTCCCTTTCAATCCAGCTGGacacttgtgttttttgttgttttgctcttGTCAATAGCATAGTGATCTGGGAAGAACAGATAACGAAAAAAAGCATACCTTCTACAATCACCCCTTTTTACTCATGGGAGAATAAATAATTGGGTTTTAGTGTTAGCTCAGCATAAAACCTCTCTTTACTGACTTGCAGCGCCCCTTACTCTTCTACCTTTGTGGAAAAGACATAAATAATTTCATGTGCATCAAAGATACATGAAACTGGAAATACCATACATATACTCGTAGGACATATGCTTTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152525 lncRNA downstream 95085 7561077 ~ 7562747 (-) True G121689
TU152218 lncRNA downstream 1233534 6420041 ~ 6424298 (-) True G121447
TU152216 lncRNA downstream 1244558 6413013 ~ 6413274 (-) True G121445
TU152215 lncRNA downstream 1249917 6407705 ~ 6407915 (-) True G121444
TU152212 lncRNA downstream 1271913 6382433 ~ 6385919 (-) False G121443
TU152558 lncRNA upstream 4135 7662986 ~ 7663677 (-) True G121718
TU152604 lncRNA upstream 171342 7830193 ~ 7845316 (-) True G121754
TU152667 lncRNA upstream 357213 8016064 ~ 8017075 (-) True G121789
TU152800 lncRNA upstream 1166580 8825431 ~ 8859003 (-) True G121875
TU152811 lncRNA upstream 1209794 8868645 ~ 8870698 (-) True G121885
AMCG00002218 mRNA downstream 10203 7646655 ~ 7647629 (-) True AMCG00002218
AMCG00002219 mRNA downstream 75734 7565399 ~ 7582098 (-) True AMCG00002219
AMCG00002212 mRNA downstream 444868 7210266 ~ 7212964 (-) True AMCG00002212
AMCG00002210 mRNA downstream 479848 7165097 ~ 7177984 (-) True AMCG00002210
AMCG00002209 mRNA downstream 548651 7090840 ~ 7109181 (-) True AMCG00002209
AMCG00002221 mRNA upstream 33109 7691960 ~ 7719401 (-) True AMCG00002221
AMCG00002220 mRNA upstream 137872 7796723 ~ 7800503 (-) True AMCG00002220
AMCG00002222 mRNA upstream 161661 7820512 ~ 7826557 (-) True AMCG00002222
AMCG00002223 mRNA upstream 167790 7826641 ~ 7837116 (-) False AMCG00002223
AMCG00002225 mRNA upstream 187487 7846338 ~ 7856519 (-) True AMCG00002225
TU151612 other downstream 3437955 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 3871288 3784236 ~ 3786544 (-) True G120927
TU151499 other downstream 3941580 3713867 ~ 3716252 (-) True G120907
TU151364 other downstream 4529888 3113442 ~ 3127944 (-) True AMCG00002094
TU151301 other downstream 4652915 2995508 ~ 3004917 (-) True G120748
TU152605 other upstream 177644 7836495 ~ 7839411 (-) True AMCG00002223
TU153137 other upstream 2173060 9831911 ~ 9833224 (-) True AMCG00002276
TU153139 other upstream 2183244 9842095 ~ 9853075 (-) False AMCG00002279
TU153575 other upstream 3866042 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 4008904 11667755 ~ 11685089 (-) False AMCG00002327

Expression Profile