RNA id: TU152558


Basic Information

Item Value
RNA id TU152558
length 692
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G121718
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 7662986 ~ 7663677 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAACGGTACAAGGCACATGGGGCAGCTCTGTATGATTGCACCTCCACCTGAATTCCCATCAGCGCTTCCATTATTAGAGGCATTATCCTTCTTACATTGAGCCGCCTTGTAACAACCCTCTTCCGTGGGGCATTTTGCCAGAGCAGTCTCCTCTGTCATAATACAGCTGTCAAAATCTCTCTCCCCGTGCGCAGGTAGCTTCCTTTTGATCAAATCTTCCTTCACTTCCCCATTTTGGGCTTTCTCTAACAAGCAAGGCCCTGCAGTGCTATTCTCCTCACGTCGGCGCTGAGCCCCTGCCTCAGTAGCCGCCCGAGCCCTGTCAGTCGATGCGCTCTGCGGTCTCCCTCCTGTCGGCCTTGATGATGGTGAGGGTTTATGTAGGTGCTGCTGCCCCGTTTCATTTCTGTGATTGCTTTTGCAAGTCTCGTTATTTCTCAGAGCTGTTCCCTCTAAGGTGGATGGCGGTTCTTTAGCATGCTTCTCTCGACTCCTGTTAAGCTGATGACTGCCATGTTGAACAAccatctcctcctccactgAAGCTTGGACTTGTTCTACAGGCTTGGCGCAGGGGTCAGCATCCACGTCTGTTCGGGCATCTGGTTGAGGAACTGAGGGGAATGCACTGCATTCTTCACTAAGTCTCTCGCAGGTCTTCCATTTCGAGCGCTGCTCTTTGGGATATCTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152556 lncRNA downstream 4135 7657832 ~ 7658851 (-) True G121716
TU152525 lncRNA downstream 100239 7561077 ~ 7562747 (-) True G121689
TU152218 lncRNA downstream 1238688 6420041 ~ 6424298 (-) True G121447
TU152216 lncRNA downstream 1249712 6413013 ~ 6413274 (-) True G121445
TU152215 lncRNA downstream 1255071 6407705 ~ 6407915 (-) True G121444
TU152604 lncRNA upstream 166516 7830193 ~ 7845316 (-) True G121754
TU152667 lncRNA upstream 352387 8016064 ~ 8017075 (-) True G121789
TU152800 lncRNA upstream 1161754 8825431 ~ 8859003 (-) True G121875
TU152811 lncRNA upstream 1204968 8868645 ~ 8870698 (-) True G121885
TU152845 lncRNA upstream 1268486 8932163 ~ 8933163 (-) True G121912
AMCG00002218 mRNA downstream 15357 7646655 ~ 7647629 (-) True AMCG00002218
AMCG00002219 mRNA downstream 80888 7565399 ~ 7582098 (-) True AMCG00002219
AMCG00002212 mRNA downstream 450022 7210266 ~ 7212964 (-) True AMCG00002212
AMCG00002210 mRNA downstream 485002 7165097 ~ 7177984 (-) True AMCG00002210
AMCG00002209 mRNA downstream 553805 7090840 ~ 7109181 (-) True AMCG00002209
AMCG00002221 mRNA upstream 28283 7691960 ~ 7719401 (-) True AMCG00002221
AMCG00002220 mRNA upstream 133046 7796723 ~ 7800503 (-) True AMCG00002220
AMCG00002222 mRNA upstream 156835 7820512 ~ 7826557 (-) True AMCG00002222
AMCG00002223 mRNA upstream 162964 7826641 ~ 7837116 (-) False AMCG00002223
AMCG00002225 mRNA upstream 182661 7846338 ~ 7856519 (-) True AMCG00002225
TU151612 other downstream 3443109 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 3876442 3784236 ~ 3786544 (-) True G120927
TU151499 other downstream 3946734 3713867 ~ 3716252 (-) True G120907
TU151364 other downstream 4535042 3113442 ~ 3127944 (-) True AMCG00002094
TU151301 other downstream 4658069 2995508 ~ 3004917 (-) True G120748
TU152605 other upstream 172818 7836495 ~ 7839411 (-) True AMCG00002223
TU153137 other upstream 2168234 9831911 ~ 9833224 (-) True AMCG00002276
TU153139 other upstream 2178418 9842095 ~ 9853075 (-) False AMCG00002279
TU153575 other upstream 3861216 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 4004078 11667755 ~ 11685089 (-) False AMCG00002327

Expression Profile