RNA id: TU152562


Basic Information

Item Value
RNA id TU152562
length 2582
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G121722
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 7829807 ~ 7834211 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gatcaaatacttttttccctcactgtatgtatgtatgaatatataggtatagatacatttatatatgtgtgtatgtataaaataataaatctcaCTTTATTTTGTCAGAAACGGAAGATGCCTATACAGGTGAAAGCAGTGATTACAGTATTCACAGcaatagcccCCTGGGGGTCTGATCAGGCACCTTGTCCTCCACCCGGGAAGGCTGACGAGGCACCACCCATCCCAGAGGGCAGATGAGGTACCCCACCACGGAGGGCTGACGGTGCATCCACACCCCGAGGGCTGACGAGGGGCCCCCGCCAGAGAGAAGGCCACAGCCAGTAGCACTGTTTAAGAACTTTTGCAGCTGTCTCACAGAATTATACTATGGGTATAATCTGGGGTCCTGGGGTCATGACCCAAAAACTCACGTGGATGTTCCTGAGGACTGAGCAGCAgtgtttgattgcctggggtctgtcggacacGGTAGTAGAcactattcagttggcgagagctccctctacgaggtctctgtattcctaccactggcaGACGTTTCGCAGCTGGTGCCAAGATGGAGCTGGAGGTTCAGCTGCAGCTTCTGGCTGTGGACCTGATGGACTTCTTCTCATCCTGCTGTCTGCACCCTGAGGCTGTTGTGCAGACCCCACACATCTGCAAATATGATCTTGACCTATTGTTATACATTGATGTAATTTGCAGGTGTTACAGATCCTTCATAGACCACCTCTCTAAATCCAAGCATTTGATATtgattgatattgatattttcaTGAATTTCATCACCTAGTAGTTAATCCGACACTAATTCCAGTACAAacttttcagatttaatttgataatgCGTTTATACAACAGTATTCTCCATACACACATCTAGCTCATATGAATATTGAAATCAGGAAAGCCAGAGCCGTATAACGTTATATTACTTAATTGTTgttcataaataataacaagaaataaTCAATTGAGGGTTAAATTGatgttgctttatttattttgtagagaaaacaaagcaataactGCAGCTTGTCtctcaccccaccccacccacaaaTAGGCCCTATTGGTAGattcaatataatgtatttactacaaataaaatacaatttaaataaacacattcatagaataatatttattgaacTGGTGAtggataataaaaataatgatcacaGGGAGTTCATTGCAATCGATAACATTTTAGTATAGAGCTGGGGACTAATACCAGTAGCCAGTGTTGCCATTGGTGTTAAGACTGCACTAATTTAGTACAGTGCTCCGTACTAACCACAGGACCATTCTGTATGCAGCTTTCAGTTTGTGGCATATTTGATTAACTTATGTTGAAAATAAGTCCTGTAATTATAATCCTGCTATGCTTGttagttaatttattaatattatgacaCCTGGATGTTTATAGCTTTTGGAAGTCACTTTGATTATCACTGGGTTTAAGTTGTGTACTCCATGCAGTAGCATTCAtagagtatatttatttatatataactccATTTCAACTGTGAACAGCTTCTGATGTAAATCTCACAATTGCACCAACAGAAGTCAGCGAAAACCTCTAATGCTCTTCCCTTTATTCTGGGCTTAGAGAACTGAAATAGTTCTAGTTTGTACAGGAAGATAAGGATTTTATTGTAGTTCAGTCATTCTGGTGTACCAGTAGTAAACTGACCTCTAGGGTGATACGTTTATAAgcaaaaacctttttttaacattgtatacTAGACTACACATCTCCacaatttcagttatttttaagcaGTATGATATTCCTGTTCAGcaaagtatgtatttaaagtgtttgaTATTGTTTCAACAAAATATAACGTTGTTGATAGCTAAATaggggtgtgtgtctgtaaacTAGTTTACACATTCAGTGAGAGCTTTGAATATCAAACTCCattgctattgtttgttttcagctgcAAAACATTGTTCTCTACTAGTAAGTACGTTTTTGAAAGCTATAATTTTTTAGTGCATTTTTCACATCCATTACTAGATTTTTAGGATAACAATtctatatttattgttaatatataaaaaatgcaaggTTTATAATGGATAAGGTTTCCACATGAGCGATTGATatgaaaaagtcaaattaataaaataagcaaatagtTTAGGGAAcaggaacaaataaaatattaaagttaaatattcTGTGAAgaactggatgtttttccctgtgtgtctgtgtgaacaaggtcactgtctcactgtctcactgtgttatagttcaaccctgattcTTAGAAGAGTCAGATAAGAACCAGGTTTCACCAGCAAACTGGGCTTGATACATCCAACAAGCCCCCCTAATATTCAACATTACATATGCCCTCATTTTAATCCCTTGTTTTaactatatatgggtcttccgAACTTCCACTCATCATGGGACAGACGTGGGCATTGtgatctttctctcctgtccggtctgcataaaagtgcctttactttgtaacttctctaagactgttcttgagattgcctcttgaacacATCTTCCTTTGTAATAAATTCCTCttgattgaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152524 lncRNA upstream 181491 7646718 ~ 7648316 (+) True G121688
TU152516 lncRNA upstream 267075 7561066 ~ 7562732 (+) True G121680
TU152324 lncRNA upstream 1031764 6792976 ~ 6798043 (+) True G121526
TU152177 lncRNA upstream 1502326 6327197 ~ 6327481 (+) True G121417
TU152159 lncRNA upstream 1551907 6277518 ~ 6277900 (+) True G121402
TU152587 lncRNA downstream 76347 7910558 ~ 7917243 (+) True G121741
TU152632 lncRNA downstream 111154 7945365 ~ 7953624 (+) True G121767
TU152757 lncRNA downstream 956090 8790301 ~ 8792478 (+) False AMCG00002245
TU152769 lncRNA downstream 982119 8816330 ~ 8816553 (+) True G121862
TU152927 lncRNA downstream 1414106 9248317 ~ 9313334 (+) True G121981
AMCG00002217 mRNA upstream 166118 7658258 ~ 7663689 (+) True AMCG00002217
AMCG00002215 mRNA upstream 418577 7393816 ~ 7411230 (+) True AMCG00002215
AMCG00002216 mRNA upstream 439156 7382538 ~ 7390651 (+) True AMCG00002216
AMCG00002213 mRNA upstream 451367 7325990 ~ 7378440 (+) True AMCG00002213
AMCG00002214 mRNA upstream 505906 7318975 ~ 7323901 (+) True AMCG00002214
AMCG00002224 mRNA downstream 93379 7927590 ~ 7937933 (+) True AMCG00002224
AMCG00002232 mRNA downstream 146093 7980304 ~ 8010540 (+) True AMCG00002232
AMCG00002231 mRNA downstream 182682 8016893 ~ 8022378 (+) True AMCG00002231
AMCG00002236 mRNA downstream 293986 8128197 ~ 8151854 (+) True AMCG00002236
AMCG00002235 mRNA downstream 327115 8161326 ~ 8178947 (+) True AMCG00002235
TU152502 other upstream 433246 7393800 ~ 7396561 (+) False AMCG00002215
TU152254 other upstream 1227199 6586654 ~ 6602608 (+) False AMCG00002190
TU152257 other upstream 1227199 6586654 ~ 6602608 (+) True AMCG00002190
TU151873 other upstream 2606309 5218830 ~ 5223498 (+) True AMCG00002152
TU151430 other upstream 4290253 3537619 ~ 3539554 (+) False AMCG00002098
TU152752 other downstream 919515 8753726 ~ 8762079 (+) False AMCG00002245
TU153130 other downstream 2010069 9844280 ~ 9851306 (+) False AMCG00002272
TU153133 other downstream 2010069 9844280 ~ 9849012 (+) False AMCG00002272
TU153306 other downstream 2733701 10567912 ~ 10594304 (+) False AMCG00002294
TU153483 other downstream 3542729 11376940 ~ 11377738 (+) False AMCG00002311

Expression Profile