RNA id: TU152604


Basic Information

Item Value
RNA id TU152604
length 4094
lncRNA type sense_over
GC content 0.39
exon number 2
gene id G121754
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 7830193 ~ 7845316 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agtattagtatggtgttcctaataatcctttagACTGTAACAGAATGAAGAGCTCAAATAATcgagagagatgtattttcaatcaaGAGGAATTTATTACAAAGGAAGATgtgttcaagaggcaatctcaagaacagtcttagagaagttacaaagtaaaggcacttttatgcagaccggacaggagagaaagatcaCAATGCCCACGTCTGTCCCATGATGAGTGGAAGTTcggaagacccatatatagttAAAACAAGGGATTAAAATGAGGGCATATGTAATGTTGAATATTAGGGGGGCTTGTTGGATGTATCAAGCCCAGTTTGCTGGTGAAACCTGGTTCTTATCTGACTCTTCTAAgaatcagggttgaactataacacagtgagacagtgagacagtgaccttgttcacacagacacacagggaaaaacatccagttcTTCACAgaatatttaactttaatattttatttgttcctgTTCCCTAAactatttgcttattttattaatttgactttttcatATCAATCGCTCATGTGGAAACCTTATCCATTATAAAccttgcattttttatatattaacaataaatatagaATTGTTATCCTAAAAATCTAGTAATGGATGTGAAAAATGCACTAAAAAATTATAGCTTTCAAAAACGTACTTACTAGTAGAGAACAATGTTTTgcagctgaaaacaaacaatagcaatGGAGTTTGATATTCAAAGCTCTCACTGAATGTGTAAACTAgtttacagacacacacccctATTTAGCTATCAACAACGTTATATTTTGTTGAAACAATAtcaaacactttaaatacatactttgCTGAACAGGAATATCATACtgcttaaaaataactgaaattgtGGAGATGTGTAGTCTAgtatacaatgttaaaaaaaggtttttgcTTATAAACGTATCACCCTAGAGGTCAGTTTACTACTGGTACACCAGAATGACTGAACTACAATAAAATCCTTATCTTCCTGTACAAACTAGAACTATTTCAGTTCTCTAAGCCCAGAATAAAGGGAAGAGCATTAGAGGTTTTCGCTGACTTCTGTTGGTGCAATTGTGAGATTTACATCAGAAGCTGTTCACAGTTGAAATggagttatatataaataaatatactctaTGAATGCTACTGCATGGAGTACACAACTTAAACCCAGTGATAATCAAAGTGACTTCCAAAAGCTATAAACATCCAGGtgtcataatattaataaattaactaaCAAGCATAGCAGGATTATAATTACAGGACTTATTTTCAACATAAGTTAATCAAATATGCCACAAACTGAAAGCTGCATACAGAATGGTCCTGTGGTTAGTACGGAGCACTGTACTAAATTAGTGCAGTCTTAACACCAATGGCAACACTGGCTACTGGTATTAGTCCCCAGCTCTATACTAAAATGTTATCGATTGCAATGAACTCCCtgtgatcattatttttattatccaTCACCAgttcaataaatattattctatgaatgtgtttatttaaattgtattttatttgtagtaaatacattatattgaatCTACCAATAGGGCCTAtttgtgggtggggtggggtgagaGACAAGCTGCagttattgctttgttttctctacaaaataaataaagcaacatCAATTTAACCCTCAATTGAttatttcttgttattatttatgaacAACAATTAAGTAATATAACGTTATACGGCTCTGGCTTTCCTGATTTCAATATTCATATGAGCTAGATGTGTGTATGGAGAATACTGTTGTATAAACGcattatcaaattaaatctgaaaagtTTGTACTGGAATTAGTGTCGGATTAACTACTAGGTGATGAAATTCAtgaaaatatcaatatcaatcaATATCAAATGCTTGGATTTAGAGAGGTGGTCTATGAAGGATCTGTAACACCTGCAAATTACATCAATGTATAACAATAGGTCAAGATCATATTTGCAGATGTGTGGGGTCTGCACAACAGCCTCAGGGTGCAGACAGCAGGATGAGAAGAAGTCCATCAGGTCCACAGCCAGAAGCTGCAGCTGAACCTCCAGCTCCATCTTGGCACCAGCTGCGAAACGTCtgccagtggtaggaatacagagacctcgtagagggagctctcgccaactgaatagtgTCTACTACCgtgtccgacagaccccaggcaatcaaacacTGCTGCTCAGTCCTCAGGAACATCCACGTGAGTTTTTGGGTCATGACCCCAGGACCCCAGATTATACCCATAGTATAATTCTGTGAGACAGCTGCAAAAGTTCTTAAACAGTGCTACTGGCTGTGGCCTTCTCTCTGGCGGGGGCCCCTCGTCAGCCCTCGGGGTGTGGATGCACCGTCAGCCCTCCGTGGTGGGGTACCTCATCTGCCCTCTGGGATGGGTGGTGCCTCGTCAGCCTTCCCGGGTGGAGGACAAGGTGCCTGATCAGACCCCCAGGgggctattgctggaagacaaagaTAAAATTGTGCTCAGCTGCTGATCATAAAATGCAGGTGATGACAGAATACATTGTACATAGCATGTCCATAGCACACCGATGGCACTATGGGTTACAGTGACTAGAAAATCAGACTAAAAGGAATAGTCATCTTCAGCCTTGATTTAAAGGCTGAGATAGAGGTGGCATCTCTTACATAGGCCGGAAGTTCGTTCTATAGTCTCGGGGTCATATAGCTAAATGCTCTAacacctgcggttttcttgtgtatttttggaCCACTAAataaccggcttcctgggatTTCAATTCCCAACCTGGAGTGTTATTGAAATGATAAAATGGACATTTGGCCCCGTCTGACAAACATCTTCTCTTCatcaaaaaatgataaaattatCTTGTAAGTATGGAGgggccagtccctttagtgctttaaataataagagaacttttaaatatatcctGCAGCGCACAGGGAGCCAGTGAACAGAAGcgaatactggagtgatgtgttcatgttttttgttttagttaagatccttgcagcagcattttgaactTAACTGTAGTGCAACTAACTGTCTTaatttagcaatgtttctaagatggaggaaggaagatcaaCACATTCTGAGTGGATAAAAGGATGGGTTATGGTcgcagatgacacccaggttcaGCGCTATCTCCTTAGGGATAAAATTGAAgctatcattactcagtttagTCAGTGAATGATGAACATTTAGATTTCTGTCCCCTAAAATGAGGACTTGTCATATCAGAGATATGCATAAGGACATTTCTTATCCAAGTTATAATCTCAGACAGAAAGCTGATTTGTGATTGTATGGCTATATTACTGTTCGGATTCACTGACcaatataattgtgtattgtcggcgtaactgtgaaagttaacaTTAAATCGTCAAATAATATAGTAATGTTTAAGTGAATTAGGGTCAGCATGAGATTGATTAAGAAGTGCTTCAATTACAGTCGTTTTAAAGGATTCaagaacagatcctgaggatacaACAGAGTAGTACATTTATTAGTAGCAGGAGGGTCTAGGATGTAATAAGGCATCGGTCAGAAatcgtctggttttggggtgatattaaGTTATGGATCTCTATcccacgggtaataactagatcaAGTGCGTCACTGTGATGATGTGTGGGTCCTGACCTGGGGGGCATTTAACAGATGTTGCTGGTgacacaatctttatatttctaactaTGAAGTCTTCAATAAAGAGCACCTTGTCGGCATACCTGCTGCTGGGGGGTTCAAATCGGATTGCGGTCCGAATGGGATACTGGAGCTCTAGCTTTGGATATCATGATTCTAGAGCCTGTTTTGACCGAGACGCTGGGATCTTCATGCTGTGGTTATAGAGCCACCGGTGTGGGCTTCTCACTAGGTACAGTAGGGCCAGGAGAATTTATTCAATCCAAATCTGGGTTTGTACAGTCTTTCATCTTTCTGAGAGTAAGTACGTGCTCCTCCAGTAAGCGTACTGCACCCGCCAACTCTTTATTAGTTAGGCATCTTGTGCAAGTAAAGTTTATCATTATGGTCATCgg

Function

GO:

id name namespace
GO:0031399 regulation of protein modification process biological_process
GO:0031400 negative regulation of protein modification process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152558 lncRNA downstream 166516 7662986 ~ 7663677 (-) True G121718
TU152556 lncRNA downstream 171342 7657832 ~ 7658851 (-) True G121716
TU152525 lncRNA downstream 267446 7561077 ~ 7562747 (-) True G121689
TU152218 lncRNA downstream 1405895 6420041 ~ 6424298 (-) True G121447
TU152216 lncRNA downstream 1416919 6413013 ~ 6413274 (-) True G121445
TU152667 lncRNA upstream 170748 8016064 ~ 8017075 (-) True G121789
TU152800 lncRNA upstream 980115 8825431 ~ 8859003 (-) True G121875
TU152811 lncRNA upstream 1023329 8868645 ~ 8870698 (-) True G121885
TU152845 lncRNA upstream 1086847 8932163 ~ 8933163 (-) True G121912
TU152874 lncRNA upstream 1172810 9018126 ~ 9018327 (-) True G121935
AMCG00002222 mRNA downstream 3636 7820512 ~ 7826557 (-) True AMCG00002222
AMCG00002220 mRNA downstream 29690 7796723 ~ 7800503 (-) True AMCG00002220
AMCG00002221 mRNA downstream 110792 7691960 ~ 7719401 (-) True AMCG00002221
AMCG00002218 mRNA downstream 182564 7646655 ~ 7647629 (-) True AMCG00002218
AMCG00002219 mRNA downstream 248095 7565399 ~ 7582098 (-) True AMCG00002219
AMCG00002225 mRNA upstream 1022 7846338 ~ 7856519 (-) True AMCG00002225
AMCG00002230 mRNA upstream 25578 7870894 ~ 7871496 (-) True AMCG00002230
AMCG00002228 mRNA upstream 42996 7888312 ~ 7901666 (-) True AMCG00002228
AMCG00002229 mRNA upstream 61719 7907035 ~ 7907578 (-) True AMCG00002229
AMCG00002227 mRNA upstream 93144 7938460 ~ 7945017 (-) True AMCG00002227
TU151612 other downstream 3610316 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 4043649 3784236 ~ 3786544 (-) True G120927
TU151499 other downstream 4113941 3713867 ~ 3716252 (-) True G120907
TU151364 other downstream 4702249 3113442 ~ 3127944 (-) True AMCG00002094
TU151301 other downstream 4825276 2995508 ~ 3004917 (-) True G120748
TU153137 other upstream 1986595 9831911 ~ 9833224 (-) True AMCG00002276
TU153139 other upstream 1996779 9842095 ~ 9853075 (-) False AMCG00002279
TU153575 other upstream 3679577 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 3822439 11667755 ~ 11685089 (-) False AMCG00002327
TU153720 other upstream 3886301 11731617 ~ 11734324 (-) True G122597

Expression Profile