RNA id: TU152667


Basic Information

Item Value
RNA id TU152667
length 331
lncRNA type inter_gene
GC content 0.54
exon number 2
gene id G121789
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 8016064 ~ 8017075 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCACGCTTGGTACACGTCCAGAACCCCGCAGCGCTGCAGTTTGCCCCGCACAATGATGGCCGCCTGCACAACCACGTGTTCGTGGGAGGCGGGGCTGGAGAGCGGCGTGTCATTTGACGAGCTGCCGGTGTGACCTTTCTGTTGACCTTTCTGTTTGAAAAACTTTTTTATAAATCCCATCTATTCAGCACAAGGCGGTTAATAGCACCGGGAATGAAGCGAAAAAAGATTCAGGTTAAAGTCCGCAGCTCGGAGCGACTCAAGGGGAAATGCCCCCCTCCTGTACACAGCACAGCGGCAGACAGTCCAGTACAGGTGGGTACAGACA

Function

GO: NA

KEGG:

id description
ko03440 Homologous recombination
ko04110 Cell cycle
ko04111 Cell cycle - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152604 lncRNA downstream 170748 7830193 ~ 7845316 (-) True G121754
TU152558 lncRNA downstream 352387 7662986 ~ 7663677 (-) True G121718
TU152556 lncRNA downstream 357213 7657832 ~ 7658851 (-) True G121716
TU152525 lncRNA downstream 453317 7561077 ~ 7562747 (-) True G121689
TU152218 lncRNA downstream 1591766 6420041 ~ 6424298 (-) True G121447
TU152800 lncRNA upstream 808356 8825431 ~ 8859003 (-) True G121875
TU152811 lncRNA upstream 851570 8868645 ~ 8870698 (-) True G121885
TU152845 lncRNA upstream 915088 8932163 ~ 8933163 (-) True G121912
TU152874 lncRNA upstream 1001051 9018126 ~ 9018327 (-) True G121935
TU152969 lncRNA upstream 1121372 9138447 ~ 9213429 (-) True G122019
AMCG00002233 mRNA downstream 1846 8012977 ~ 8014218 (-) True AMCG00002233
AMCG00002226 mRNA downstream 36982 7969903 ~ 7979082 (-) True AMCG00002226
AMCG00002227 mRNA downstream 71047 7938460 ~ 7945017 (-) True AMCG00002227
AMCG00002229 mRNA downstream 108486 7907035 ~ 7907578 (-) True AMCG00002229
AMCG00002228 mRNA downstream 114398 7888312 ~ 7901666 (-) True AMCG00002228
AMCG00002234 mRNA upstream 5602 8022677 ~ 8027024 (-) True AMCG00002234
AMCG00002237 mRNA upstream 479007 8496082 ~ 8522830 (-) True AMCG00002237
AMCG00002238 mRNA upstream 689454 8706529 ~ 8708937 (-) True AMCG00002238
AMCG00002239 mRNA upstream 695390 8712465 ~ 8720117 (-) True AMCG00002239
AMCG00002240 mRNA upstream 793244 8810319 ~ 8813591 (-) True AMCG00002240
TU152605 other downstream 176653 7836495 ~ 7839411 (-) True AMCG00002223
TU151612 other downstream 3796187 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 4229520 3784236 ~ 3786544 (-) True G120927
TU151499 other downstream 4299812 3713867 ~ 3716252 (-) True G120907
TU151364 other downstream 4888120 3113442 ~ 3127944 (-) True AMCG00002094
TU153137 other upstream 1814836 9831911 ~ 9833224 (-) True AMCG00002276
TU153139 other upstream 1825020 9842095 ~ 9853075 (-) False AMCG00002279
TU153575 other upstream 3507818 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 3650680 11667755 ~ 11685089 (-) False AMCG00002327
TU153720 other upstream 3714542 11731617 ~ 11734324 (-) True G122597

Expression Profile