RNA id: TU152769



Basic Information


Item Value
RNA id TU152769
length 224
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G121862
representative True

Chromosome Information


Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 8816330 ~ 8816553 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


aaaacagcagagtccttgacctcattccggcgcttactcaagacgcatctcttccgacagcacttgtaatattagtcctctatccctgctagatagcacttcagcttattatgctcctcgcgttcttgattgttttcctccttgctccctttcccgtagccctcgtctgtaaccctacatcttgacagcacttagcttcaccgtccaggatgtaggaagtctct

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU152757 lncRNA upstream 23852 8790301 ~ 8792478 (+) False AMCG00002245
TU152632 lncRNA upstream 862706 7945365 ~ 7953624 (+) True G121767
TU152587 lncRNA upstream 899087 7910558 ~ 7917243 (+) True G121741
TU152562 lncRNA upstream 982119 7829807 ~ 7834211 (+) True G121722
TU152524 lncRNA upstream 1168014 7646718 ~ 7648316 (+) True G121688
TU152927 lncRNA downstream 431764 9248317 ~ 9313334 (+) True G121981
TU152945 lncRNA downstream 726062 9542615 ~ 9562591 (+) True G121999
TU153022 lncRNA downstream 808691 9625244 ~ 9626221 (+) True G122058
TU153035 lncRNA downstream 812045 9628598 ~ 9628833 (+) True G122063
TU153071 lncRNA downstream 877163 9693716 ~ 9759061 (+) True G122086
AMCG00002241 mRNA upstream 6535 8806116 ~ 8809795 (+) True AMCG00002241
AMCG00002245 mRNA upstream 24987 8738771 ~ 8791343 (+) True AMCG00002245
AMCG00002235 mRNA upstream 637383 8161326 ~ 8178947 (+) True AMCG00002235
AMCG00002236 mRNA upstream 664476 8128197 ~ 8151854 (+) True AMCG00002236
AMCG00002231 mRNA upstream 793952 8016893 ~ 8022378 (+) True AMCG00002231
AMCG00002246 mRNA downstream 42880 8859433 ~ 8867964 (+) True AMCG00002246
AMCG00002244 mRNA downstream 57237 8873790 ~ 8893838 (+) True AMCG00002244
AMCG00002242 mRNA downstream 90380 8906933 ~ 8916579 (+) True AMCG00002242
AMCG00002243 mRNA downstream 105361 8921914 ~ 8933126 (+) True AMCG00002243
AMCG00002257 mRNA downstream 207518 9024071 ~ 9026586 (+) True AMCG00002257
TU152752 other upstream 54251 8753726 ~ 8762079 (+) False AMCG00002245
TU152502 other upstream 1419769 7393800 ~ 7396561 (+) False AMCG00002215
TU152254 other upstream 2213722 6586654 ~ 6602608 (+) False AMCG00002190
TU152257 other upstream 2213722 6586654 ~ 6602608 (+) True AMCG00002190
TU151873 other upstream 3592832 5218830 ~ 5223498 (+) True AMCG00002152
TU153130 other downstream 1027727 9844280 ~ 9851306 (+) False AMCG00002272
TU153133 other downstream 1027727 9844280 ~ 9849012 (+) False AMCG00002272
TU153306 other downstream 1751359 10567912 ~ 10594304 (+) False AMCG00002294
TU153483 other downstream 2560387 11376940 ~ 11377738 (+) False AMCG00002311
TU153583 other downstream 2812459 11629012 ~ 11630892 (+) True G122482

Expression Profile