RNA id: TU152811


Basic Information

Item Value
RNA id TU152811
length 2034
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G121885
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 8868645 ~ 8870698 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AATCATCTCAAACTGCTTTTTATTACATCTTAaataacagtacattttaatatagtatCTATCTTGCATCCAGCTTTCTGTAGTACACTgacttcaaaattaaatacaaaaggtGAGAAGGGAACAGTGGGGTGCAGAGAGCTCTACAGTTATTTtatggaaagagaaaaagagagggattttattttattatttattttttatttttttgccaagTCCAGGCCTAACGCACAATTACAGCACATTTTTTGTACAGAATGTCgcagagaaaaacagaatggagaaaaaaaatgccacTACTGCTAAATAAAGAGCGTTTCTGTATACAGTGAGAAGAGAATAACAGACAATTCTGCCATTCAAATgctgcaactttttttttttttttttcattttttattaaagaaagccAGAAAAAAAACCTGTTCGTTACAAAATGATTCTAACATTTTTCGGTACTGGAAATAGTTCACTACAGAAGGAATCGGAATCTTTTCTCCcgcccctccctcccccccaatgtgtgtatttatgtgatCCGTTTAAAAACAGGGTGGactttttgtttcattcctttcctttctttaagAATCATTCCAAAGATGGCGATCAGAACAGGCTCGAGTATGGTTTTAAATTTCGAATTAATATTCATGACGACGGTGCTTCTCTTTCAGGTGCATAGCTTTCCATTTTAACTTAATGACGTATGCACAGAGTAGCCAAAACAATATGAACACAGCGGCAATGATTACAGTTTTAACAGgttattttcttaaagaaaaacatcaaaggACTTAGTTCCatatgcacttttttttttttaaagcaattctACAGCATGCGATTCTAAGAGTTAACCCACCCATGGCAGACAAccaaaagatttttttttttatttttaacttagaAAGttcaatatcattattttcaaacattgaTTTATACAACATTTCATTCACAGAGTAGTAACTGCATTTCCAAGCACGGAGAGGGCACCTCTGTTTTAACAGGAAACTCCGGAGCAAAACCGGGGTAAAAATTCAGCCCCCCACCCAGCCAACCCTCCCTACccgtcccccccacccaccccgcccaaaaacaaatttaaaccaaaatgaaaaaacaaaaacaaaacaaaaaacgagggattaatcttcatttaattattctacattttacccaacaaaaaaaataaaacaaaaaagtgaagaaagttgttaaaattgtaatttttgtttttaaaaacgaGCATTCATTATCATAAACAGCATGTGCTTGGTTAGTTAACGTTTTCAACATTATTCTATATACGCAAAGTTTCTTTTTGTGCAAACAAAGATCTGTgacaagacagaaaaaaaaaaaaaaaaaaaaaaaaatctaaattaaaaaaaaataataatctgggaCTAAATATACAGAATTGACATCCCCCAAAAGCTGGTCTTGGACTCCCTGGTGAAgcggcttttgttttttttaattccatagGTGATTAAGCGGacttaaaacaaatgacaagtGATTCTTCGTACTTTTATTTTCAACTCCTCTACAAACATGATCCTAAAATCGTAAAGACTGCGAGATAAAAGAAAGCTTCCATTTCTCGTTTTTAAACCAAGAAGGTCACTGATCTAAaacctggaaaaacaaaagcaaaacaaccgaaaaaaacaaaaacaaaaacaaaagttagaTCGTTTTTTACGACTACGCGCAAACATTTGTATTCaaggtacattttgtattggatgatagtgtttttgtttgcttttctctctcaaGACAGTAACATAAAATGGTCCCAAAAGGAAtgcacaattttgtttttcttttaataccaCAGGAAATCTTCTTTTTTGTTGGGTGATAAAACAATTGTGCTCTTCTTTTTAATGAGAGAAGGTAACATTTTGCCCTTCGTAGTTTTGGGGATGTTTGAGTCAGTATGAGTGGATTGGATATGCAATGAAACTTAATATTTTGATGTTGGAATGGTTTTCCAGTCACTTTGGAGTCCAAATGCCA

Function

GO: NA

KEGG:

id description
ko04727 GABAergic synapse
ko04744 Phototransduction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152800 lncRNA downstream 9642 8825431 ~ 8859003 (-) True G121875
TU152667 lncRNA downstream 851570 8016064 ~ 8017075 (-) True G121789
TU152604 lncRNA downstream 1023329 7830193 ~ 7845316 (-) True G121754
TU152558 lncRNA downstream 1204968 7662986 ~ 7663677 (-) True G121718
TU152556 lncRNA downstream 1209794 7657832 ~ 7658851 (-) True G121716
TU152845 lncRNA upstream 61465 8932163 ~ 8933163 (-) True G121912
TU152874 lncRNA upstream 147428 9018126 ~ 9018327 (-) True G121935
TU152969 lncRNA upstream 267749 9138447 ~ 9213429 (-) True G122019
TU152989 lncRNA upstream 413271 9283969 ~ 9287587 (-) True G122037
TU153015 lncRNA upstream 741364 9612062 ~ 9614287 (-) False AMCG00002265
AMCG00002240 mRNA downstream 55054 8810319 ~ 8813591 (-) True AMCG00002240
AMCG00002239 mRNA downstream 148528 8712465 ~ 8720117 (-) True AMCG00002239
AMCG00002238 mRNA downstream 159708 8706529 ~ 8708937 (-) True AMCG00002238
AMCG00002237 mRNA downstream 345815 8496082 ~ 8522830 (-) True AMCG00002237
AMCG00002234 mRNA downstream 841621 8022677 ~ 8027024 (-) True AMCG00002234
AMCG00002247 mRNA upstream 27927 8898625 ~ 8903588 (-) True AMCG00002247
AMCG00002249 mRNA upstream 63271 8933969 ~ 8946187 (-) True AMCG00002249
AMCG00002251 mRNA upstream 86412 8957110 ~ 8982144 (-) True AMCG00002251
AMCG00002252 mRNA upstream 125004 8995702 ~ 9005887 (-) True AMCG00002252
AMCG00002248 mRNA upstream 147909 9018607 ~ 9022271 (-) True AMCG00002248
TU152605 other downstream 1029234 7836495 ~ 7839411 (-) True AMCG00002223
TU151612 other downstream 4648768 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 5082101 3784236 ~ 3786544 (-) True G120927
TU151499 other downstream 5152393 3713867 ~ 3716252 (-) True G120907
TU151364 other downstream 5740701 3113442 ~ 3127944 (-) True AMCG00002094
TU153137 other upstream 961213 9831911 ~ 9833224 (-) True AMCG00002276
TU153139 other upstream 971397 9842095 ~ 9853075 (-) False AMCG00002279
TU153575 other upstream 2654195 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 2797057 11667755 ~ 11685089 (-) False AMCG00002327
TU153720 other upstream 2860919 11731617 ~ 11734324 (-) True G122597

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU281323 False 313 lncRNA 0.50 2 NC_053131.1 33218134 ~ 33218504 (-)
eurasian perch (Perca fluviatilis) TU72112 False 2093 lncRNA 0.35 3 NC_053116.1 29291883 ~ 29294161 (-)
striped catfish (Pangasianodon hypophthalmus) TU72112 True 422 lncRNA 0.33 1 NC_047598.1 7786214 ~ 7786635 (+)
tiger barb (Puntius tetrazona) TU281323 True 1759 lncRNA 0.35 2 NW_025048402.1 336593 ~ 382359 (+)
mexican tetra (Astyanax mexicanus) TU80441 True 1164 lncRNA 0.36 1 NC_035902.1 47660194 ~ 47661357 (-)