RNA id: TU152845


Basic Information

Item Value
RNA id TU152845
length 942
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G121912
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 8932163 ~ 8933163 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAATGACATGGAAAAATGGTAAAAGGAAAAAGGTTCTAAAATTCTTTATTacttccattaaaaataaaagaccaacaaaacaaaaaaaggttcaAAATGTCAAAGTCTCAGAGCTCAAAATCTCATGAAGGTTTAAGTCTTTTCACCCCATGACAAGTGCCTGATCAATGTGGAACACGGGGACATCCTGTACTATTGAGCGCTCCCCAAAAacgagaaataaagaaaaaatgattCCTCCAAGAACTCTGGTCCCCTTCTGTAAAATAAGAAGTTGGTGTGAAATGAAGAAACCCATaatggatatttaaaaaaagtcccAAAGACttgggggagagaaaaaaaaggcaagtcTACTTTAAGGGATGTactgaataaaaattaaaaaaagacaaaaataaaagtttttggATGTTGCCTACTTTAAATCCTGTTTCCTTGGGCTTCAACTCAAATCATACGTTTCAAGGAAAACTGGTTAAGACACGCTTCCCTATAATTGACAGCGCTCTGTCTGGGCTGATTTCATGTCTGCAATCCGAGGCATACAGGCCTCTCCCGACACTTCTTGCACAGCTGTCTCCAGCAGTCCTTTAGTCTTTCTCAAGACAGCAGAGTACAGTCTTGTCAATTCTGTGAGAGCAAGTGCGCATCCCCACAACCCTCGAGTCTGTGAAGCGCGTCCCGTCCAAGGCGCTCTGGAGCCGCGGGACCCGAGAGGACTCAGAACTTGAGGCTGAAGCCGGGCCCTGCTGCCGAGGCACCCTGGTTGGTGGTGGTGAGATGGAAACCTGTATCTTTCAAGTCATCATCCCCCTGgagaaattgaataaatacataaacacctGCATAAATACAACTGCAAGACATAGGCAAGAGAAAGATGagtattttctgtcattttaaatgcatagatcacatatgaataaaatgatatatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152811 lncRNA downstream 61465 8868645 ~ 8870698 (-) True G121885
TU152800 lncRNA downstream 73160 8825431 ~ 8859003 (-) True G121875
TU152667 lncRNA downstream 915088 8016064 ~ 8017075 (-) True G121789
TU152604 lncRNA downstream 1086847 7830193 ~ 7845316 (-) True G121754
TU152558 lncRNA downstream 1268486 7662986 ~ 7663677 (-) True G121718
TU152874 lncRNA upstream 84963 9018126 ~ 9018327 (-) True G121935
TU152969 lncRNA upstream 205284 9138447 ~ 9213429 (-) True G122019
TU152989 lncRNA upstream 350806 9283969 ~ 9287587 (-) True G122037
TU153015 lncRNA upstream 678899 9612062 ~ 9614287 (-) False AMCG00002265
TU153025 lncRNA upstream 687865 9621028 ~ 9621472 (-) True G122061
AMCG00002247 mRNA downstream 28575 8898625 ~ 8903588 (-) True AMCG00002247
AMCG00002240 mRNA downstream 118572 8810319 ~ 8813591 (-) True AMCG00002240
AMCG00002239 mRNA downstream 212046 8712465 ~ 8720117 (-) True AMCG00002239
AMCG00002238 mRNA downstream 223226 8706529 ~ 8708937 (-) True AMCG00002238
AMCG00002237 mRNA downstream 409333 8496082 ~ 8522830 (-) True AMCG00002237
AMCG00002249 mRNA upstream 806 8933969 ~ 8946187 (-) True AMCG00002249
AMCG00002251 mRNA upstream 23947 8957110 ~ 8982144 (-) True AMCG00002251
AMCG00002252 mRNA upstream 62539 8995702 ~ 9005887 (-) True AMCG00002252
AMCG00002248 mRNA upstream 85444 9018607 ~ 9022271 (-) True AMCG00002248
AMCG00002250 mRNA upstream 122151 9055314 ~ 9061095 (-) True AMCG00002250
TU152605 other downstream 1092752 7836495 ~ 7839411 (-) True AMCG00002223
TU151612 other downstream 4712286 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 5145619 3784236 ~ 3786544 (-) True G120927
TU151499 other downstream 5215911 3713867 ~ 3716252 (-) True G120907
TU151364 other downstream 5804219 3113442 ~ 3127944 (-) True AMCG00002094
TU153137 other upstream 898748 9831911 ~ 9833224 (-) True AMCG00002276
TU153139 other upstream 908932 9842095 ~ 9853075 (-) False AMCG00002279
TU153575 other upstream 2591730 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 2734592 11667755 ~ 11685089 (-) False AMCG00002327
TU153720 other upstream 2798454 11731617 ~ 11734324 (-) True G122597

Expression Profile