RNA id: TU153035


Basic Information

Item Value
RNA id TU153035
length 236
lncRNA type inter_gene
GC content 0.56
exon number 1
gene id G122063
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 9628598 ~ 9628833 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctgacacagagagagtgatGGACTGAGCGCCGTCTTGGTGGGCTGGGCAGCGCTAGCAGGAGGAGAACGTCTTCCAGAAGAAGTTCTTACAGGGAGTTCTCTCTCGGGTCACAGGCTGGCTGTACAGGGACCTCTCCCCCAGCTGGGACAACTTGAGCGGCTCCCGATCCCCACCCGAGAGCTCTTTCCCCAGCCCGTTAAAATCAGACAGTCCAGACAAAATCTTCAGAAGaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153022 lncRNA upstream 2377 9625244 ~ 9626221 (+) True G122058
TU152945 lncRNA upstream 66007 9542615 ~ 9562591 (+) True G121999
TU152927 lncRNA upstream 315264 9248317 ~ 9313334 (+) True G121981
TU152769 lncRNA upstream 812045 8816330 ~ 8816553 (+) True G121862
TU152757 lncRNA upstream 836120 8790301 ~ 8792478 (+) False AMCG00002245
TU153071 lncRNA downstream 64883 9693716 ~ 9759061 (+) True G122086
TU153125 lncRNA downstream 200921 9829754 ~ 9830678 (+) True G122119
TU153132 lncRNA downstream 215447 9844280 ~ 9849012 (+) False AMCG00002272
TU153135 lncRNA downstream 234123 9862956 ~ 9898880 (+) True G122126
TU153225 lncRNA downstream 450914 10079747 ~ 10132200 (+) True G122198
AMCG00002264 mRNA upstream 3904 9619457 ~ 9624694 (+) True AMCG00002264
AMCG00002262 mRNA upstream 344165 9253274 ~ 9284433 (+) True AMCG00002262
AMCG00002258 mRNA upstream 443035 9173970 ~ 9185563 (+) True AMCG00002258
AMCG00002261 mRNA upstream 475688 9151395 ~ 9152910 (+) True AMCG00002261
AMCG00002253 mRNA upstream 489144 9130005 ~ 9139454 (+) True AMCG00002253
AMCG00002266 mRNA downstream 25900 9654733 ~ 9655758 (+) True AMCG00002266
AMCG00002272 mRNA downstream 215372 9844205 ~ 9851312 (+) True AMCG00002272
AMCG00002274 mRNA downstream 224717 9853550 ~ 9863089 (+) True AMCG00002274
AMCG00002273 mRNA downstream 244514 9873347 ~ 9874094 (+) True AMCG00002273
AMCG00002278 mRNA downstream 322173 9951006 ~ 9971665 (+) True AMCG00002278
TU152752 other upstream 866519 8753726 ~ 8762079 (+) False AMCG00002245
TU152502 other upstream 2232037 7393800 ~ 7396561 (+) False AMCG00002215
TU152254 other upstream 3025990 6586654 ~ 6602608 (+) False AMCG00002190
TU152257 other upstream 3025990 6586654 ~ 6602608 (+) True AMCG00002190
TU151873 other upstream 4405100 5218830 ~ 5223498 (+) True AMCG00002152
TU153130 other downstream 215447 9844280 ~ 9851306 (+) False AMCG00002272
TU153133 other downstream 215447 9844280 ~ 9849012 (+) False AMCG00002272
TU153306 other downstream 939079 10567912 ~ 10594304 (+) False AMCG00002294
TU153483 other downstream 1748107 11376940 ~ 11377738 (+) False AMCG00002311
TU153583 other downstream 2000179 11629012 ~ 11630892 (+) True G122482

Expression Profile