RNA id: TU153125



Basic Information


Item Value
RNA id TU153125
length 925
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G122119
representative True

Chromosome Information


Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 9829754 ~ 9830678 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GCGCTTAGTTGtatcagtttaatacatttttattattctgcctGTGAAGATGTACAGAGTTTTTGTTGTCTTGCaggattgttattgttatgattatacCTGATCTTACAGTTGAAGTTGCCCATTGATTCATTGAATTCATTGAACTGCTTTTACATCATAAACCCTTTGATGTGTCATACATGAAAGTGTCATACTTAACCACAACTTGTCATACAGGACCAAAAAATGCAACACAGATACTGTTCACTtgcagaattattattaattgttattctGTTCAAGAAAGACACTTAGAGATGGTCTGCGCTAATAAACAGATGAACAAAAAACTGTGAAGtaacaatcaattaattaagaaaccAGACCAAGACCACAAAGCATTAACACTCTCAAGCCCACATGGAGAAAGTACAATTTTATGGTACTAGTGCGTCTCTCTGTACGAGCCCGTCAGCGGTACTTTAACACAAGTTCATCTTTCTCAGTCTTGTGGAGCTGAAGGATCTGGAGGTACCCGGCCCTTACAACACCAGTCATTGCACTGTAAGGAATAACTAGCGCTCTTCTGCACTCTCTGCTTCGTGCTAAATAATACCTCCTACCCAGCGCCAGCCCAAGCTCTTAGTCTAGGGTCCCTCCTTGATGTATCACATGTGTAATGCCAAttaaagagaaataataataataataataataataataataataataataataataataataataataataaagggaagttgtttttttaataacatttcacTTCAACTGCAAAATTTAAATCCTGcagatatttaaattgcattttattattacatctaCTGATATAATTGTGTCCCTGTATATTGCCACTAATCTTACTCTACTCCAGTACGGACAAGTTCAGTAAGTGGTCTAACAACCCTCTCTAGTGTTTCGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU153071 lncRNA upstream 70693 9693716 ~ 9759061 (+) True G122086
TU153035 lncRNA upstream 200921 9628598 ~ 9628833 (+) True G122063
TU153022 lncRNA upstream 203533 9625244 ~ 9626221 (+) True G122058
TU152945 lncRNA upstream 267163 9542615 ~ 9562591 (+) True G121999
TU152927 lncRNA upstream 516420 9248317 ~ 9313334 (+) True G121981
TU153132 lncRNA downstream 13602 9844280 ~ 9849012 (+) False AMCG00002272
TU153135 lncRNA downstream 32278 9862956 ~ 9898880 (+) True G122126
TU153225 lncRNA downstream 249069 10079747 ~ 10132200 (+) True G122198
TU153270 lncRNA downstream 492851 10323529 ~ 10326651 (+) True G122236
TU153350 lncRNA downstream 922000 10752678 ~ 10753881 (+) False AMCG00002296
AMCG00002266 mRNA upstream 173996 9654733 ~ 9655758 (+) True AMCG00002266
AMCG00002264 mRNA upstream 205060 9619457 ~ 9624694 (+) True AMCG00002264
AMCG00002262 mRNA upstream 545321 9253274 ~ 9284433 (+) True AMCG00002262
AMCG00002258 mRNA upstream 644191 9173970 ~ 9185563 (+) True AMCG00002258
AMCG00002261 mRNA upstream 676844 9151395 ~ 9152910 (+) True AMCG00002261
AMCG00002272 mRNA downstream 13527 9844205 ~ 9851312 (+) True AMCG00002272
AMCG00002274 mRNA downstream 22872 9853550 ~ 9863089 (+) True AMCG00002274
AMCG00002273 mRNA downstream 42669 9873347 ~ 9874094 (+) True AMCG00002273
AMCG00002278 mRNA downstream 120328 9951006 ~ 9971665 (+) True AMCG00002278
AMCG00002287 mRNA downstream 470629 10301307 ~ 10304361 (+) True AMCG00002287
TU152752 other upstream 1067675 8753726 ~ 8762079 (+) False AMCG00002245
TU152502 other upstream 2433193 7393800 ~ 7396561 (+) False AMCG00002215
TU152254 other upstream 3227146 6586654 ~ 6602608 (+) False AMCG00002190
TU152257 other upstream 3227146 6586654 ~ 6602608 (+) True AMCG00002190
TU151873 other upstream 4606256 5218830 ~ 5223498 (+) True AMCG00002152
TU153130 other downstream 13602 9844280 ~ 9851306 (+) False AMCG00002272
TU153133 other downstream 13602 9844280 ~ 9849012 (+) False AMCG00002272
TU153306 other downstream 737234 10567912 ~ 10594304 (+) False AMCG00002294
TU153483 other downstream 1546262 11376940 ~ 11377738 (+) False AMCG00002311
TU153583 other downstream 1798334 11629012 ~ 11630892 (+) True G122482

Expression Profile