RNA id: TU153135


Basic Information

Item Value
RNA id TU153135
length 3218
lncRNA type read_through
GC content 0.40
exon number 4
gene id G122126
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 9862956 ~ 9898880 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGAGTCACGCAGCTCCGACTCGCTCTACAGACTGTCGGGATGTGACCCCGGAACAGGACGCCTCCTCAGAAACACAACACACCATTCAAATACAAggcaggagaagaaaaaaaaaagcggaTCTGGAGCAGGAGAGGGCCACAGGAGCTGGGGGGATGAACCGAGAAGATGGCCCCGGGAAGTCGCCCGAAGAGATGTACATTCAGCAGAAAGTTCGCGTCTTGCTCATGCTGAAGAAGATGGGGTCCAATTTGACACCTAATGAGGAACAGTTTCTCCAGAACTATGCTGGTGTGGTGCACAGCCAGATGAGTCAACTCCCCCAGCACCCCATCGACCAGGGTGCCGAGGACGTGGTGATGGCATTTTCCCGCTCGGAGACGGAAGACCGGCGGCAGTGACCTCCCAAGACGAAACCATGACAACGGCGACGATGACAACACTACAACTACTGCTGAGAGGGGTGGCAGCCTGGGGCAGAGGGGTCCTGGGTGCTACCCAACTCCCTgccttcctcctctctcctcctcctttcaCATGACCGCCAACATAGTATTCAGGACCTGGGGCTTTCTGTTGGGACAGAACTAGAAGAGAAGAactgaaaagaaggaaaaaaagaattTGGTGCGTCTCCTTTCTGGTTCTGATTCCAATCCCCTCTCCCcggtgggttttgttttgtttgtgttttgcttgttttgttgtcttttggTGATAAAATGAACAGAACTCTTGCACAGTGTCTTTATGACTATTGACCAGTAGGACGTCAGGTAGGCAGGGAGGaagaaagcaagcaagcaagcaagcaaggaaggagggagggagggatgcaCGGAACTCTGAAAGTGAAACTTTGTTGGCAAATTCTTGTTTTTCATGATTAACAGGGAGGTGGGAGCGGGGAAGCgacagaaatgttgtttagAGGAGATGGTTACAGTTTGtctgtgaaatgtgattttctttttgtatgttattattcAACAGCccattgccttttattttttatgctatTTGGCTGGACATGGACATTGTATATACACccattgtgttgtgtattttagCGACAGGAATCCTTTTATTTAAGCTGCTGTGCAATGTACTCTGCTTTCAAGATAAAAATATTGGAAAAAGAGGTTGGATGGAAAAAAACCATCAGTCAATTATCCTGACCTACAGGAGCCTGAGAGGATAGCGGGGCAGGACAGCAGAGTATCTATCGATCCAGTGTGGGGAGGAGGGAGCGTGTTTAACCGGcatgcacatatacatatccagaaacacacacatgcaaacgcACAGCTGAGTTTACAACTGgttgatgtcacatttttagGTCTAATACAAGGTCactatgtatttgtaaaatgatgAAATCTTTTTATTGTACAGAAAAGACTAAATGAAAGCCAAGACGGAGAATTAATGAACTGCTATGTGCCAtctgtaatttttttgtttttgtttcttaatgatTGTAGAAAAAACTTTGTATCCGAGGATCACATAAGGggcctgatttatttattgtttttttaatgataattttTGATTATTGTGTCTTACTTTGAGGTAAATGAAGCCCAAGTAACAAAGAGCAGAGGTGGGGAAATTGGATGGAAAACAGATCTTTGTATCTGGAAGTTTTTAGGGGGGAAAAATGTACCCATATTTGATTGAAATATCCTCCAAGATGCAAATGATCTGGATTGGAGTAGTGTGGATGAGTGgggtatgaaaaacaaattaaagatatgCAAAAACATAATAGGAGGTAAGTGggacatatatattttacatgccTAAAACTAGAACAGTTAAGAAACCTTTCCAATTCATACACTACACTTCTGGAACTCCCTGTAAGCCCAAACTACAGAAAAAGCTGAGGGATTGTCTCTCAGGTATttcattaatcttttaaaactACAAACTACACTGCAAGTAACAGTGCCACCTTCACTGGCAATAAAATCATGATAATTCATCACTTTTTTTAATAGCCTTCAAAATAATTAAGGTTCCTTAAAtctaatgtgtgtatgtgtttgctGATTTAACTGGaattctgtatgtttttaatattttgtttggatATGTACGCTTTATATAAACGCCTTTTTGTGATGCTCCCACACTAATACtttgtgttaaatgtgtgtgttctgttttgtgttttcttggtCTTGTCTTGCTTTCAAAACCTTCTTTTGTTGAATTGGAGCATGCGAGTGAGCATGTTTAATTTTTACAGTGCGCGCTAGCCATTCTCGGTCTTAAGAGTATTGTCTGGGTCATTCTTGTCTGTGCATTTCAATGGTCTGGGAAGACTGCTGTTCGTGGATTTATTCTTTGGAAATTTATGTGGAATGGAATGCAAAAAAGATGTTTCAGGcacatggggtgggggggagtagAAGTGTTATGTATGTGGATATTTTATTTGGTCAACAAGAAcaaaggtaataataataatatggtgcCATTTCCTCAGATGTTTActgtaactttttaaattattattattatggtaattGTCCTAGTCTGTTTTGATTTATGCTTCTATGCATTTTCCTAAACGAAAAAGACACTGTGTCACAATCAGCCCTATAATAAACTGGTGGCGAAAACTTAGTTCTGGAGGACCGCAGTGTCATCTGAATTTTGTTCTACCTTAATGCTCAATTAGCAATTATTTGGTCCCTTGAACCATAGGCCTTGTTCTAGGTTTTGAACAGGTGGGGTGTGTAAAGAGACTTCCATACCCTGCAGGATGGCGATCCTCCAGAACTATATCTGACCCTGGCCCTTACCAGACAAATAacgaaattaatattttattgtgattactTTGCATAAATGATATGTGtcctgttttatattttcaccCTGTATACTGTGTGTGAAACCTGTGAGTACTGACACAACTGCAAATTCTCTGTCCGTTCTTTTGTGGAAATGCGTTCCTGGCACAAATGCTGTTTCAGTCTTCACTTAATCAAACCAACCGGAGACTGTaagaggtaaaaataaaaacaatcaatcacacGAGCACAATGATTTCATCATtgacattaaaaggaaaaagacaacCATGCATgacagttttattaatttacaaacaaaaaaaatgtttagacaggattatttgttgttgttttttttttgtttcttttttaagaaatacTGTATTCctcataattattataaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153132 lncRNA upstream 13944 9844280 ~ 9849012 (+) False AMCG00002272
TU153125 lncRNA upstream 32278 9829754 ~ 9830678 (+) True G122119
TU153071 lncRNA upstream 103895 9693716 ~ 9759061 (+) True G122086
TU153035 lncRNA upstream 234123 9628598 ~ 9628833 (+) True G122063
TU153022 lncRNA upstream 236735 9625244 ~ 9626221 (+) True G122058
TU153225 lncRNA downstream 180867 10079747 ~ 10132200 (+) True G122198
TU153270 lncRNA downstream 424649 10323529 ~ 10326651 (+) True G122236
TU153350 lncRNA downstream 853798 10752678 ~ 10753881 (+) False AMCG00002296
TU153390 lncRNA downstream 971893 10870773 ~ 10927943 (+) True G122328
TU153467 lncRNA downstream 1436051 11334931 ~ 11348638 (+) True G122389
AMCG00002272 mRNA upstream 11644 9844205 ~ 9851312 (+) True AMCG00002272
AMCG00002266 mRNA upstream 207198 9654733 ~ 9655758 (+) True AMCG00002266
AMCG00002264 mRNA upstream 238262 9619457 ~ 9624694 (+) True AMCG00002264
AMCG00002262 mRNA upstream 578523 9253274 ~ 9284433 (+) True AMCG00002262
AMCG00002258 mRNA upstream 677393 9173970 ~ 9185563 (+) True AMCG00002258
AMCG00002278 mRNA downstream 52126 9951006 ~ 9971665 (+) True AMCG00002278
AMCG00002287 mRNA downstream 402427 10301307 ~ 10304361 (+) True AMCG00002287
AMCG00002290 mRNA downstream 467269 10366149 ~ 10376762 (+) True AMCG00002290
AMCG00002289 mRNA downstream 485545 10384425 ~ 10392661 (+) True AMCG00002289
AMCG00002291 mRNA downstream 500781 10399661 ~ 10425473 (+) True AMCG00002291
TU153130 other upstream 11650 9844280 ~ 9851306 (+) False AMCG00002272
TU153133 other upstream 13944 9844280 ~ 9849012 (+) False AMCG00002272
TU152752 other upstream 1100877 8753726 ~ 8762079 (+) False AMCG00002245
TU152502 other upstream 2466395 7393800 ~ 7396561 (+) False AMCG00002215
TU152254 other upstream 3260348 6586654 ~ 6602608 (+) False AMCG00002190
TU153306 other downstream 669032 10567912 ~ 10594304 (+) False AMCG00002294
TU153483 other downstream 1478060 11376940 ~ 11377738 (+) False AMCG00002311
TU153583 other downstream 1730132 11629012 ~ 11630892 (+) True G122482
TU153608 other downstream 1789720 11688600 ~ 11694165 (+) True AMCG00002331
TU153704 other downstream 1936559 11835439 ~ 11836169 (+) True G122582

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00044269 True 2098 mRNA 0.41 4 NC_007134.7 29711569 ~ 29751730 (-)
grasscarp (Ctenopharyngodon idella) TU23058 True 1852 lncRNA 0.41 1 CI01000001 11890305 ~ 11892156 (-)