RNA id: TU153141


Basic Information

Item Value
RNA id TU153141
length 2089
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G122131
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 9848235 ~ 9851376 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

attctgaactgtgatctACCCTAAAGTaagcaagaaaaatatattttgacaagGACAACACTCAGGTAGTTAAAGGGAGATATGTTTATTGACTGTCACAAGGAAAAAGACACCCAAGAAAAGATCTTGGGTGCTGGTAAACAGTATGGtctaaacaattttattttacactgtacagaagcaacagcaaaacaaacaacagtaaTACTGAGGATTTATTGTGacatacaaaataagtatttaggTTACTCCATCGATACTACTTTTTCAGTGGTGTGTCATTTGGAAGCAGTTAATATAGTTATTCAGTAACAGTcattttgtaaacaaacaaagcacTCGGCTAAAATACTATTGTAATAAAAGGTTAGATCTGTATAAATACAAGTAGTTTTGGTCCTCAATAAAGTCAGTGCTATACATTTGATCTTTATCgtcccaaaaaaagaaaacaaaaatacaaaatgtgttatttcaaaatacttttagaCTCTTGAATAGTAGAAAACCTGCAAGTGTATGCTATGTATTTTATCTGTAAGTTTAAAGAAGACTGAACTggaatgcttttttgttttctggaatgTAGAGTGCCCAGGGAGGAAATTGTCAGTCTTTACCATATTGTGTGGCAGTGGAGAGATTATTTTAAGGGCATTGGTGTGTCTTGCCGTATAtagataaaaaaacataaaaacagtagGTTTACCTTGAACAATTCCTGAGATATGATTCAATAGAATTCATCAGGTTTTATAGAAACTCACTATTTTCCATTCAAGTTTCAAAGTGAATCATAATTTCTATGCTACATAGAAAACTGAGAAAGGAATATTTTGAGAGACACGAGCACACCTGCAAGATGCCCATCTCAGTTCTTCTACCTCAACTTCATGTGCAGAGATCATTTACCAGGAGTAAGTTATCAGCTGTGCAGTGGTGACAGTAGCTAAACTGAAATGCTGTTTGGCAATTGAAATAAAACGTAAGATATTCCCCAGAGCTCAACTCGTGGAAGCACCGTTATCTTAATTTGTCACAACAAACCACTCTCATGAAATCAAACTTCAGGCGTGAGACTGAGGGAACACATGCACATTGTGTCCTATCAGCATGGCGGTTTCATGATAAGAATGCCTGGGCGTTCCTTTGATTTAAGTCTAAAAGGAGGCACGTTTTGCGATTGCATTTAGGCACCAACCTACTGCACTTTCCTTCTAGTCTGCAGCTGCTGTATAATATCTACAGAATACAAAACAGCCACTTGGTTGAACCCCTTCCAGAAGTCTCTCTGTTTTTGTGGCTTGAAAGATGCATCTTAGGATCTGACTTAAATCTAAGGCAGTCTGTATTGCAGAATGGGTGAATAATTAATAGCTGGCGTGCATCTTGTCAAGCCGCTCTGCTGAGGAGCCGTGCCGTTCTCTAGCTCGGTGATCACAGGTGGAATTTTCCAGCCTGCCCTGGTTGCTAGGGGGTTGCCATGGAGAGAAGGCTCACAGTATGATGGGGCTGTGATGCGGTGAGAGGTCAGATGTGCGGTCAGATGTGCCAGAGACAGGAGCAGCTGCTGACGGGCTCAAGGCAAACCCCAGTCCTGGAGCGCAGGTTCAACACTGACCAGGGATACAGCTGATTAACAGCCCAGAAACCCCCCATGGCCATGAAAAACCCTGAAAGGGAAATCAATAAAAGCCATTTGAAAGCTGAGCCTACCCATATTTTTGACATAATATGTAtcaactgctttaaaaaattgAACGTGTattacagatttttatttttaactaggcTTTATATAGGatgtgaaaaaaacagcacatcaTATATTACTAATTATTAGGAGAAATGTGACATTTAACACATGAATTGTAGACAATTGGCTGTTAATATAATTAGACttgaatatactgtatatgttgaAACTACCAATTATATTTAATCCCATTTTACAGTTCAATAGATCAGTTCAAAATAggttaaaaattaataaatacataagttgAATTTAATGCACACTTTACCTGTAGCCAGCATACTACCCACTGATAGCATTAAGGATAGGTAGTATAGTTCAGGAGTTGTTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153107 lncRNA downstream 72240 9757425 ~ 9775995 (-) False AMCG00002275
TU153025 lncRNA downstream 226763 9621028 ~ 9621472 (-) True G122061
TU153015 lncRNA downstream 233948 9612062 ~ 9614287 (-) False AMCG00002265
TU152989 lncRNA downstream 560648 9283969 ~ 9287587 (-) True G122037
TU152969 lncRNA downstream 634806 9138447 ~ 9213429 (-) True G122019
TU153259 lncRNA upstream 371837 10223213 ~ 10224982 (-) True G122226
TU153264 lncRNA upstream 428376 10279752 ~ 10279984 (-) False AMCG00002288
TU153358 lncRNA upstream 899035 10750411 ~ 10750781 (-) True G122302
TU153380 lncRNA upstream 960810 10812186 ~ 10813876 (-) True G122319
TU153396 lncRNA upstream 986428 10837804 ~ 10847201 (-) False AMCG00002301
AMCG00002279 mRNA downstream 3909 9836918 ~ 9844326 (-) True AMCG00002279
AMCG00002276 mRNA downstream 15147 9830519 ~ 9833088 (-) False AMCG00002276
AMCG00002277 mRNA downstream 40937 9802308 ~ 9807298 (-) True AMCG00002277
AMCG00002275 mRNA downstream 47127 9757613 ~ 9801108 (-) True AMCG00002275
AMCG00002268 mRNA downstream 122969 9693760 ~ 9725266 (-) True AMCG00002268
AMCG00002280 mRNA upstream 126400 9977776 ~ 10006571 (-) True AMCG00002280
AMCG00002286 mRNA upstream 173043 10024419 ~ 10030406 (-) True AMCG00002286
AMCG00002285 mRNA upstream 215536 10066912 ~ 10076666 (-) True AMCG00002285
AMCG00002283 mRNA upstream 227781 10079157 ~ 10093103 (-) True AMCG00002283
AMCG00002282 mRNA upstream 338387 10189763 ~ 10197544 (-) True AMCG00002282
TU153137 other downstream 15011 9831911 ~ 9833224 (-) True AMCG00002276
TU152605 other downstream 2008824 7836495 ~ 7839411 (-) True AMCG00002223
TU151612 other downstream 5628358 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 6061691 3784236 ~ 3786544 (-) True G120927
TU151499 other downstream 6131983 3713867 ~ 3716252 (-) True G120907
TU153575 other upstream 1673517 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 1816379 11667755 ~ 11685089 (-) False AMCG00002327
TU153720 other upstream 1880241 11731617 ~ 11734324 (-) True G122597
TU153763 other upstream 1997094 11848470 ~ 11854891 (-) True AMCG00002350
TU153773 other upstream 2020486 11871862 ~ 11872862 (-) False AMCG00002351

Expression Profile