RNA id: TU153225


Basic Information

Item Value
RNA id TU153225
length 1348
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G122198
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 10079747 ~ 10132200 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGTCATCAGaagttgaagaaaataatacaccAGCACCTGTTCAAAGTGAAGTGGCACAAAggacatgtttaaaaatgtggtgaaaaatatttaaatggagaaaaatgcTTGTAATAGTGTGATTGTGTTCTGGAAGTAATGATAATTTCCCCAAAGGAAAGCAAATGTTACTCTTGTTTGTGTGGCCACTGGTTTCTTTGAATCACACTCTGAAAAGTAACACATTTAACAtgtattagtgttttttttttttctttttttattaaaccactGTTTCAATATGCATTTAGGTCCTCATtcctttgaaaaacacaatatcGCATTTCCTAAGACAAGAcgaaataattatattcacaataaaataaatgttacagttaAACAGACAAACgtaaccaaaaaaataaaatcaaataaaatattctagGACAGGTGGCAAAgtcagcagtagtagtaataatttAAAGTGAATTTCCACCCTGCAGCCACTCTACTGAAGGTGCGGATGGTAAACAGACACATAGATCTTCAGAACCCCTGCAGAACTAAGAACTATAATACACTATGCAGGTAAGCCAACTCTGTACAgtgccatgtgggcagtgacCAGTACCTTTACAGCAAACCTCAAGGCCTTTCTGTGGACTTGTCAAGCAAGCATTCGAACatgataaaattaaaaaaacaaaaacttgactGATCATCTTtggatattttacatttgtatgaaaataaactgaagtaaATCTTCGTTGATATCACGGTACTATACTTCTTAGTTGACATGTACGTGTTCTTGTTGCGATTTACTGGTCAACTGATACGGGGatgatacagaaataaaaagtaccttattttacacaaacatggtgagaaaacacaatgaaacaacaccaatttgtttttctctctctgtccgtctgtctgtcttgctCACAGCCCCTCCcctctttaattgtatttagaactttgaaatgaaattaacTCAATTCAAGTACATGTCCAAGAAATCCTCAGAAAAAGGTCCTCCTTCAAAATCCAACAGTAAACCACAAAAGCACTTTCAACTGTTCCATGCACACCATGCTCTGTTTGTCTGTATGCTGTTTTCAATTTGGTTCGTCTCAGTCTCATGGTTCCTCTTGCTGCTCTATTTGGTTTGGCTTCCTAGTAGATGGACTATAAGCTCATAGGTGGAGAGCACTATGGCAGTGTTTGGGATCTGCCTAATAAGCTGTGCCGACAGTCCCCTGTAGAAAGCTGAGTAGCCCTCCTCTATGAACACAAGACGCGCTGTCTGGAAAAAATACTTGTACTTGCTGCCCTCTTCCCGAAGCCTCtcTGGAAAAA

Function

GO: NA

KEGG:

id description
ko03010 Ribosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153135 lncRNA upstream 180867 9862956 ~ 9898880 (+) True G122126
TU153132 lncRNA upstream 230735 9844280 ~ 9849012 (+) False AMCG00002272
TU153125 lncRNA upstream 249069 9829754 ~ 9830678 (+) True G122119
TU153071 lncRNA upstream 320686 9693716 ~ 9759061 (+) True G122086
TU153035 lncRNA upstream 450914 9628598 ~ 9628833 (+) True G122063
TU153270 lncRNA downstream 191329 10323529 ~ 10326651 (+) True G122236
TU153350 lncRNA downstream 620478 10752678 ~ 10753881 (+) False AMCG00002296
TU153390 lncRNA downstream 738573 10870773 ~ 10927943 (+) True G122328
TU153467 lncRNA downstream 1202731 11334931 ~ 11348638 (+) True G122389
TU153478 lncRNA downstream 1226761 11358961 ~ 11359521 (+) False AMCG00002310
AMCG00002278 mRNA upstream 108082 9951006 ~ 9971665 (+) True AMCG00002278
AMCG00002273 mRNA upstream 205653 9873347 ~ 9874094 (+) True AMCG00002273
AMCG00002274 mRNA upstream 216658 9853550 ~ 9863089 (+) True AMCG00002274
AMCG00002272 mRNA upstream 228435 9844205 ~ 9851312 (+) True AMCG00002272
AMCG00002266 mRNA upstream 423989 9654733 ~ 9655758 (+) True AMCG00002266
AMCG00002287 mRNA downstream 169107 10301307 ~ 10304361 (+) True AMCG00002287
AMCG00002290 mRNA downstream 233949 10366149 ~ 10376762 (+) True AMCG00002290
AMCG00002289 mRNA downstream 252225 10384425 ~ 10392661 (+) True AMCG00002289
AMCG00002291 mRNA downstream 267461 10399661 ~ 10425473 (+) True AMCG00002291
AMCG00002293 mRNA downstream 325124 10457324 ~ 10541658 (+) True AMCG00002293
TU153130 other upstream 228441 9844280 ~ 9851306 (+) False AMCG00002272
TU153133 other upstream 230735 9844280 ~ 9849012 (+) False AMCG00002272
TU152752 other upstream 1317668 8753726 ~ 8762079 (+) False AMCG00002245
TU152502 other upstream 2683186 7393800 ~ 7396561 (+) False AMCG00002215
TU152254 other upstream 3477139 6586654 ~ 6602608 (+) False AMCG00002190
TU153306 other downstream 435712 10567912 ~ 10594304 (+) False AMCG00002294
TU153483 other downstream 1244740 11376940 ~ 11377738 (+) False AMCG00002311
TU153583 other downstream 1496812 11629012 ~ 11630892 (+) True G122482
TU153608 other downstream 1556400 11688600 ~ 11694165 (+) True AMCG00002331
TU153704 other downstream 1703239 11835439 ~ 11836169 (+) True G122582

Expression Profile