RNA id: TU153467


Basic Information

Item Value
RNA id TU153467
length 1809
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G122389
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11334931 ~ 11348638 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TACAAATTCCGTCTCTTCGCATTAAAAGCTTAACCAGGTATCGGTGCCGAGCACACTCCTCTTGCAGCGGCGCAAGAGGGAAGACTTTctaccttgttttgttttgatgtttttttactttttcatcgTATGTAATTGTTAGTCagtttgttgtgtgtgagtgtgtgtgtgtacttttgCCTCCTGTTTTCGGTGCACCCTTTTCTCCAGACCGCTCGGCTCCTGAAGAGAGGCAGACGCAAACCGAGcaacaagtttttttgtttttttttgtccttcgGTGAGCAGGGAGAAGAGGAAGACGATCTCCGGCGGCTCAGCTCGTGCACAATGgtgccttttttctgttttcgaTGGCTGCCGGTTGGCTGGGCTGCGGAGCGGCAGGTTTCACCTCTCCTTTCCTGGAGCCTCGCCTTCTCCATCCAGGTCAGAGATCACAGATCACTCCACAACTCGCCCCCCGACCAAACCCCCTGCACTGCCCCACCCCGCCCACAGCCATTTTTGCCTGCTGATTAACGTCTTACCAGACAAGGTTAGATCTATCTTCTCCTGTCTAATACTGTCTGGTAATGCCGTTCATCACAAGGCCATAATTCTTCAGGCTTCCCTGGGCCGTGGCCGCCAGCCTCAGCAGCAGGCCCTGTCCTCCTGGGGACATGATGAGCAAATGACGATGGTGACGGTGATGATGAAGGAGAAAGATGGGTAAATTAACTATGATGAACTATGAACCTTGCACTGGAAGATTGGTGTGCTTTACAGAGCTCTTCCAGGTGCATTGCGTCAGAGTTTGCCGCGTAACTCCACCCCTGAGCAtctacatatattattattctgcctaaatatatatacatatacgtatacattattttgtccttagTAAGACTGCTGTGCTTCTTACTAAAACcaactgaaagaaaagaaagaacacacgaAAACAAACTCAATCTAATACTACATAAGGGCTTGGATGCAAAcgagattaaattaaatacaacaacagcaacaaaagtTTTGGTGTGAGTTTAAATCTGGAGAAAGAATATatatctaaatctaaaataacacCCTCCCCATATGCACTCTCCGTGTCTCTGTCTGCAGGGACCTATCCTCACTGATCAGGCCCAGCCTCCTATTGTGTTTTATCTTTTCATTGTTAATCTTCTTTTTTCTAGTCTGTTCCTAAAACTCCTAAGCCTGTCTGAGCACCTTGCTTCTGTACGGGATTTGTAAGCAAAGACTCCAGTAAGATAACAgatgtacagtatttaacaGGAGGAAAACAGTTATCAAGCGTCGGCCTTGAGCTTTTGAGTGAATTGTTATGTATTTACTCTcacacactgtgtgtgtgaacgtGTGGATGGCTGATAATATAAGACTCTAGACACTAGAATGGCTGccattaaagtaaaaaaggaagaacaaaggaaagaaaaagaaagcaacaaaacaTCCATATACACATTTTTCACCCTCCATCCCCCAAATATATGAGGGACCTGAATGGGAGACTTTACGGTCGTCATGGTTTCCTGAATTCCAAACTAGACTGACTCACCCAAGTCCACAGTCATAATTGGTCAGTTCACTGGCGCTCCTCAAAGGCCTTGTTTTAAGGTATGCTGCCTGGCGGGTCTCCAGGCTATCTAATCAAAAGCCTGGGCACTTTTCTCAAGCACTCATTTCTGATCTAACAGACATTCATTCCTTCTGAGCTCCTCTGAATGAAACACCAGGACTGTTGTAATGGAACTCGTCAAGAGAAGGCACagatgacaataaaatattaaactcaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153390 lncRNA upstream 406988 10870773 ~ 10927943 (+) True G122328
TU153350 lncRNA upstream 581050 10752678 ~ 10753881 (+) False AMCG00002296
TU153270 lncRNA upstream 1008280 10323529 ~ 10326651 (+) True G122236
TU153225 lncRNA upstream 1202731 10079747 ~ 10132200 (+) True G122198
TU153135 lncRNA upstream 1436051 9862956 ~ 9898880 (+) True G122126
TU153478 lncRNA downstream 10323 11358961 ~ 11359521 (+) False AMCG00002310
TU153482 lncRNA downstream 16976 11365614 ~ 11367895 (+) False AMCG00002311
TU153499 lncRNA downstream 109006 11457644 ~ 11470525 (+) True G122417
TU153564 lncRNA downstream 173536 11522174 ~ 11522631 (+) True G122467
TU153565 lncRNA downstream 174234 11522872 ~ 11523114 (+) True G122468
AMCG00002307 mRNA upstream 63602 11255732 ~ 11271329 (+) True AMCG00002307
AMCG00002309 mRNA upstream 89951 11214084 ~ 11244980 (+) True AMCG00002309
AMCG00002308 mRNA upstream 132930 11144009 ~ 11202001 (+) True AMCG00002308
AMCG00002306 mRNA upstream 194244 11127459 ~ 11140687 (+) True AMCG00002306
AMCG00002305 mRNA upstream 232927 11097491 ~ 11102004 (+) True AMCG00002305
AMCG00002310 mRNA downstream 8914 11357552 ~ 11359840 (+) True AMCG00002310
AMCG00002311 mRNA downstream 18928 11367566 ~ 11379568 (+) True AMCG00002311
AMCG00002314 mRNA downstream 44317 11392955 ~ 11406464 (+) True AMCG00002314
AMCG00002316 mRNA downstream 216371 11565009 ~ 11587894 (+) True AMCG00002316
AMCG00002323 mRNA downstream 253572 11602210 ~ 11612235 (+) True AMCG00002323
TU153306 other upstream 740627 10567912 ~ 10594304 (+) False AMCG00002294
TU153130 other upstream 1483625 9844280 ~ 9851306 (+) False AMCG00002272
TU153133 other upstream 1485919 9844280 ~ 9849012 (+) False AMCG00002272
TU152752 other upstream 2572852 8753726 ~ 8762079 (+) False AMCG00002245
TU152502 other upstream 3938370 7393800 ~ 7396561 (+) False AMCG00002215
TU153483 other downstream 28302 11376940 ~ 11377738 (+) False AMCG00002311
TU153583 other downstream 280374 11629012 ~ 11630892 (+) True G122482
TU153608 other downstream 339962 11688600 ~ 11694165 (+) True AMCG00002331
TU153704 other downstream 486801 11835439 ~ 11836169 (+) True G122582
TU153909 other downstream 785148 12133786 ~ 12140465 (+) True G122746

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU930600 True 2399 lncRNA 0.41 2 NC_048573.1 53016433 ~ 53019001 (-)