RNA id: TU153499


Basic Information

Item Value
RNA id TU153499
length 1544
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G122417
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11457644 ~ 11470525 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCTGGTGGTTTATTATCCTGCACGTGGTCACAGGAAACATTCATATGAAACaaaactgtgtttattttcatttttatattctttaaaaaaaaaaagtgcaccgtaatatataaataaataaagtcgaattgtttatttttaatagttagACCACGTTCTGATACTTTTCTCACCTAAGGTTACCCATTACCTCATGCACAGCCAGAGAACAATTTCTATGTGGTGCATTTTTGCATGTTTCCTCTCTTATCGGTTCACAGATTATACTTCTTTCCTGCCGGTGACACATGTGGCAGATGTTTAACCCCAGCTGAGCCGACGTCCTGACgtatatcttttttttgtgaaatctGATATGTGAAATAAGTACAACAGAAGAAGGAAAAGTACACATTGCGTACATTTTTCTAAATCTGGTTCTGCTtctataataaacatttgaatgccGTTTTTGTATGGTGGATGAAGGGGTGCAAGGGGGCATCAATCGAGTTCATTTTTTTGTCAAGTGTCAGTGGAACACCGCGGAGCCTCTGTCATCAAGGTGAAAGTGTTACTTTTGGTAGGTTTTCTGTCTGATAAATCAAACTGAAAGCACGATCTGACTTGACGATACTGCCGTGCTGTTCTGGGGACGTCCACTAGAGGATGCAATCACAGGACACCCCCAGAAATCCAGAGAAGGCAGTGGAAAATGTACCTGAGGTTATTTACAGCAACATCATGCAGACTAGTGTAGGTTGTCAGGGATGTTGTAGGTTAGAGGAAAAGGATTTCAGATTTCAAAGGGTAACAGGTTAGTGTTTTCAGAAGCTAAGGTTGcgaatattgattttatttgcttatttttaagtGGTAAAACATTTACTAACTTACAATTTACACTCCGCTAAGAGCTACTTCAATAGCTGCATTCTATTTATATTAGAAATCTGTCTCATGGCGATCTGTCACCATTCCTAAGCTATAATTACAGTCCAGTTGCTTACTGCAGAGGTTTCATAAATAACAATGGGATCAATCTGTACCTCCAAAATCAGCCGATAAAGAGATCAATAGTACCTAATGGTCAGTCCAGCTATATTTCAGGCTccagggagggggggggcagccTGAACAGCGGCACTGATGCTGcaatatcaacaacaacaatatttataaccacaataatattacatttcacaatattaaAGTTTCTTGTGCCTTTTTGAATTTCAGTTCTTCAGTGTCAGCAATCTGTCCCGTTTTCCATAGAGGACACACAGCAGATCCCCGGGGGGGGCATTGCCACACAGAGCAAAGGGATCCAACCAAATGCCAAGGCATCACATCCAGGTGAAGCGTCTCTAGATCAGGAAAACACTCGGCACACCACTCGCCAACGGGCAGCACAGCCCCAGGCCAGTGCTGTGGAAAGCTGCCAGgatgtgtgggagtgtgtgagacagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgagagtgtgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153482 lncRNA upstream 89749 11365614 ~ 11367895 (+) False AMCG00002311
TU153478 lncRNA upstream 98123 11358961 ~ 11359521 (+) False AMCG00002310
TU153467 lncRNA upstream 109006 11334931 ~ 11348638 (+) True G122389
TU153390 lncRNA upstream 529701 10870773 ~ 10927943 (+) True G122328
TU153350 lncRNA upstream 703763 10752678 ~ 10753881 (+) False AMCG00002296
TU153564 lncRNA downstream 51649 11522174 ~ 11522631 (+) True G122467
TU153565 lncRNA downstream 52347 11522872 ~ 11523114 (+) True G122468
TU153566 lncRNA downstream 52702 11523227 ~ 11523622 (+) True G122469
TU153568 lncRNA downstream 54707 11525232 ~ 11528098 (+) True G122470
TU153569 lncRNA downstream 60361 11530886 ~ 11533460 (+) True G122471
AMCG00002314 mRNA upstream 51180 11392955 ~ 11406464 (+) True AMCG00002314
AMCG00002311 mRNA upstream 78076 11367566 ~ 11379568 (+) True AMCG00002311
AMCG00002310 mRNA upstream 97804 11357552 ~ 11359840 (+) True AMCG00002310
AMCG00002307 mRNA upstream 186315 11255732 ~ 11271329 (+) True AMCG00002307
AMCG00002309 mRNA upstream 212664 11214084 ~ 11244980 (+) True AMCG00002309
AMCG00002316 mRNA downstream 94484 11565009 ~ 11587894 (+) True AMCG00002316
AMCG00002323 mRNA downstream 131685 11602210 ~ 11612235 (+) True AMCG00002323
AMCG00002325 mRNA downstream 153256 11623781 ~ 11628341 (+) True AMCG00002325
AMCG00002324 mRNA downstream 166288 11636813 ~ 11644784 (+) True AMCG00002324
AMCG00002331 mRNA downstream 218084 11688609 ~ 11693910 (+) False AMCG00002331
TU153483 other upstream 79906 11376940 ~ 11377738 (+) False AMCG00002311
TU153306 other upstream 863340 10567912 ~ 10594304 (+) False AMCG00002294
TU153130 other upstream 1606338 9844280 ~ 9851306 (+) False AMCG00002272
TU153133 other upstream 1608632 9844280 ~ 9849012 (+) False AMCG00002272
TU152752 other upstream 2695565 8753726 ~ 8762079 (+) False AMCG00002245
TU153583 other downstream 158487 11629012 ~ 11630892 (+) True G122482
TU153608 other downstream 218075 11688600 ~ 11694165 (+) True AMCG00002331
TU153704 other downstream 364914 11835439 ~ 11836169 (+) True G122582
TU153909 other downstream 663261 12133786 ~ 12140465 (+) True G122746
TU154058 other downstream 1587548 13058073 ~ 13061685 (+) False AMCG00002388

Expression Profile