RNA id: TU153515


Basic Information

Item Value
RNA id TU153515
length 2039
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G122432
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11407524 ~ 11409586 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTCACAGACACAACTGAATTAATTAGGAAGACAGAATTAGAATACAACAACACAGAGGACCTGTTTTTTTGCCATTCTGTTGAGTTTTAATAGATTACAAAGCATGTCAGTCACATTGGTCTGAAAGATTGTCAACACAGAAGTATTCCTGCATTGGATTAATTCCTACATAGATCACAGTCActacatacaaacaaaagagCTTTCAAGAGATCCATCATCCTCAGTTCTATTGTTGATTCCATTGTATTCGATCTATATATTCTGTTGTACCATTGTACCTTGGCTTAGCTTCTGTAAATGTTATCTTATTTCAGAATGAATTCGATTTTTTATTGTGgctcttatttaaaaaaaagaaaaaacccacATGTAGGCATTCCCCTAATTCGCAATGAATAGGTCAGAAACAGCGCTCAGTTTTAAATCTcgtcagacagacacacacacgcagaaacacacaaactcacagagacatacacaaaggaaaataaaaaaaattgaaaaaaacacctAACCACACTGTGACCAGGAGAGAGATAGTTTGCCATCAGCAGGTGGGGACAGCCCCACGCCCAGCTCCCGGTAGACTTACTAAGATTATTCGCTGCAGGAATTAAGTACTCCTCTCCCAACAGGCTGCCAATGAAGTTACAGCTAGGGGCGCCCTGAATGACAAGCATCTTCTAAGCcacaaactgtaaaatacttttacgTACTGTTGTCTCTGCATCTGATTGATGAATGGCCaggttaattaagtaattataaaaGCCCCAGAAGACTCTACAGCCTCACCAGGAACTGTGTTTGAGTGCCCTGGGGTATATAGTGCAATCCCATCTGTGCTGCTCCCTGTGGTTAGTCTGAGAGGCTGCAAACCAGCATTCATGATTTCATCacactttttcaaataaaataatgtaaagaaagaacaaaagaaaaaacgccccatattaaaatgaacactacatatatatatatatatatatatatatttatatttatatatttgatttatctCAAGCCCAGCTTCCAATGAACATGAAAgcccaaaattaaaatattgtgatgTGTAGAGGAAACCAGAGCGTACCTGTtctgctatttttaaacttcctTTATATGAGCTCTTAAGTACCGGATGAAATTAGCAAATATTTCCACTGTATCAGACACTGAATCGTCCAACTAAATTGCAATGAAAACTCAGTGAAGGCTGTACACTTTGAGTCATAGGATCCTTTttatgcttttgaaaatatggagtttgttatttttctctctttttcttttactttcagCTTTCTctcgttttctttttctttcttgttttaaagGTCCATCCTGAGACACCCTTGGTCTTGTCTCTGGATGGGGCTCACCTGCCGggaactgcaaataaataaatacttttcctAGAAGCTCTGTCCCCAGGAGTGGGCACCACGGCAGCCATTTGGGCTGAGCTGTGATGCTGAACGGGTCCTGGTGTGCACGGTCCACCAAGGCTGTCGCTGTTCTGTGGCCACAATGTCACCAGCTTCTTGCAAGAGTCCTTTCTCTGTTTCTATGTTTCCAATGTCTCTCCAAATCTCCTCAGTGTAGTCTTCCTAGTACAGCCTCAATCCCAAGGAGTTCTTCCTAGTCAAGTTCAGTCTGACACATGTTAGGTCAgccttctttttatttattttttatttttttggtagttTTTTGTATAGTTTCAAATCAATCTGGGCTTGGGCCGGGGACAGGTGCGGAAGAGGCATCAGCCAGCTCAGATCCTTCTCTTCTTTGGAATGAGGGGCGGTGGCTCTTTGGAGATGGTGTTGAAGATTTCTTCGGGCTTTTGTTAGAAAAGTAAGAAGCAGTGGTTTACTTGTTGTGTATGCGCACACAGACTGACTACACAACCCACATTAATGGAAATTCCCAAGTCAATAAACAGAGGGGTGTCTGTTGCCAATACACTGAGTCTCTGCCTATCAGATACTGACTAAAGATTACCATGGTATTactcactgaaaacaaaaac

Function

GO:

id name namespace
GO:0050900 leukocyte migration biological_process
GO:0002376 immune system process biological_process
GO:0030595 leukocyte chemotaxis biological_process
GO:0060326 cell chemotaxis biological_process

KEGG:

id description
ko04650 Natural killer cell mediated cytotoxicity
ko04660 T cell receptor signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153446 lncRNA downstream 132997 11267564 ~ 11274527 (-) True G122376
TU153396 lncRNA downstream 560323 10837804 ~ 10847201 (-) False AMCG00002301
TU153380 lncRNA downstream 593648 10812186 ~ 10813876 (-) True G122319
TU153358 lncRNA downstream 656743 10750411 ~ 10750781 (-) True G122302
TU153264 lncRNA downstream 1127540 10279752 ~ 10279984 (-) False AMCG00002288
TU153524 lncRNA upstream 39980 11449566 ~ 11449791 (-) True G122438
TU153646 lncRNA upstream 192386 11601972 ~ 11628435 (-) True G122530
TU153665 lncRNA upstream 304823 11714409 ~ 11716145 (-) True G122548
TU153668 lncRNA upstream 308944 11718530 ~ 11718969 (-) True G122551
TU153761 lncRNA upstream 434806 11844392 ~ 11845671 (-) True G122632
AMCG00002312 mRNA downstream 102679 11293094 ~ 11304845 (-) True AMCG00002312
AMCG00002313 mRNA downstream 128391 11278426 ~ 11279133 (-) True AMCG00002313
AMCG00002303 mRNA downstream 478521 10926868 ~ 10929003 (-) True AMCG00002303
AMCG00002301 mRNA downstream 561540 10838915 ~ 10845984 (-) True AMCG00002301
AMCG00002302 mRNA downstream 617569 10755832 ~ 10789955 (-) True AMCG00002302
AMCG00002315 mRNA upstream 49477 11459063 ~ 11467699 (-) True AMCG00002315
AMCG00002319 mRNA upstream 75173 11484759 ~ 11505246 (-) True AMCG00002319
AMCG00002318 mRNA upstream 96289 11505875 ~ 11509991 (-) True AMCG00002318
AMCG00002317 mRNA upstream 104414 11514000 ~ 11527918 (-) True AMCG00002317
AMCG00002322 mRNA upstream 121692 11531278 ~ 11532015 (-) True AMCG00002322
TU153139 other downstream 1554449 9842095 ~ 9853075 (-) False AMCG00002279
TU153137 other downstream 1574300 9831911 ~ 9833224 (-) True AMCG00002276
TU152605 other downstream 3568113 7836495 ~ 7839411 (-) True AMCG00002223
TU151612 other downstream 7187647 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 7620980 3784236 ~ 3786544 (-) True G120927
TU153575 other upstream 115307 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 258169 11667755 ~ 11685089 (-) False AMCG00002327
TU153720 other upstream 322031 11731617 ~ 11734324 (-) True G122597
TU153763 other upstream 438884 11848470 ~ 11854891 (-) True AMCG00002350
TU153773 other upstream 462276 11871862 ~ 11872862 (-) False AMCG00002351

Expression Profile