RNA id: TU153569


Basic Information

Item Value
RNA id TU153569
length 2007
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G122471
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11530886 ~ 11533460 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tcctgtatACAAGATCAGACTGAGGATTTAAAATGGCCTGAATGAAGTTGGTACAGAaccaatttgtttaaaaagaagaaaaaaaaacattttggaaaaaacaaagaaaccaaaaaacaactgATGACTAAAAACAGATGACTGATACATGAGTGGAAATGAAGACGCTGGACAGCAGGTAAAATGTAGTAATTGAACAGTTAAAGGTTggggaggggatggggggaACTTTAAAACTGCGACagatactgaagaaaaaaaatgaatttgaggTATTATCCTGGCTGAACTGAACATGATTTACCTACAGCCTGCTGGGGAGAGAGCGAGCCCTCTTGTCCCCCCCAGTGCGACCTGCTCCCACCCAAAGAGCCCCTCAGCACCTGGCCTTGTCACTTCTCTGGTTCTCTGCCCCTTGTCCTCTTCTTGAGTCTATCCTGCAAAAACCAGGTGCAGCTGCTCCTTGTATCCTGTGCAGCACAGAAATAATTAACCCAATCCGGCCCCCGTTTTTCTTGACTAGTATGTatacacttttttgtgtttgtgtttttttttggtgggggggccAGATTAGATGGTTGATATGAGTCTCTGCTGACCAATTGGCTAAATTATCTGAAGCACGTTCTTGTTGTAAATCAGTAacctgttaaaaacaaataaacatccGTGCCAGAGAACCCTgtgggctgctcagcactggCGCTCTTCCAGTGGAGCCAGAGGAGCCAAAGCACACTTTCACAGCACTCGGCTGCTTGGCACAGGGTCACAGCCTGTGCAGGACTGGCTGGCCGAATCTCAGGCTTGTATTAAGGGGACAGGGAGGCTGAAAGTTTGCGTTTCACTTTCCTTCAAGTCTTCTGACTGGACTGCCTGCCTGCACACTGCCCTCGCAGAAACACCATTGCAGTTTGGCTTTTCAAAATTATAGGCCTCAAATGGTTTACCTGGGCATGGGGGGAGGGGTTGATGGGTGGGGGGCTTAGGTAGTCAGGCAGTGTTGGTGCGGTGGAGTCTGGGGTCTTGCTGGAGCACTCAATATCTCCATAAGCAGCACAGCTCCCCTTCAGGCGACAGTAAGTGAGACAGGACCTCCCGCAGACTTGCTGACCGTACCCAGACATACAGCGCTGCGGCCCGGGGGGAGAGGGTGTCTAGCtaatccagttaattgtgtCACCGAGCATGGGGGGTGATCCAAATTGGGATGGGGGGTGCTGTCTGTCAGCTATTTTGGAGGACAGCGATTGTTAAATAAATTGGGAAATTATTTGCCGCTGATCTTGAAATTTGGGCACTCCAGCAGtaaagactaaaaataaaaataaaagattaataaacatattaattatgataattaacCAGAAGAGTATGGGTGCTCTCCTATAGGGAGAGTGTGGAGAGCTCAGGGGAGTGCTGCACTGGTGTCAGCGCACCCAGGTTAATGTGGCACTTTGCTGtgaggggtggtggggggattAACCCTTGCCAGCCCAGAGGGACATCTACATAACATACAGAGGGCTGGGTACACTGGGAGCTCAAAAGGcaattctttaaaattatttttttttactcacaAGACCATTTCAGCTCCTCGCTCAACAACAGCAATCATTGCACAGCTCACTCCGTATGGACCGGCAACCGTGGTTGGGCTGTGCAGGGGAATAGACGGGGCTGGTGGCGGGGCAGCGGTGTCTCCCGAGGGGGCCCCAAGATCCTTGTGCTCTGAGGTCAGGGGTGGAACTCTGGGTGGCTCCTGGGattccatctccctctctctttccatctccTCTACTCTCctactctctccttctctctccctctctgtttctgtcaCTTGTTCCCTTtccatctccatctctccttccctgtccacctccatctctccttccctctctcctccactctCCATCTCCATTTCTCCTTCCCTGTCcacctccctctccatctctctttctctctccatctccgtGTTGTCCAGtccctgcagagaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153568 lncRNA upstream 2788 11525232 ~ 11528098 (+) True G122470
TU153566 lncRNA upstream 7264 11523227 ~ 11523622 (+) True G122469
TU153565 lncRNA upstream 7772 11522872 ~ 11523114 (+) True G122468
TU153564 lncRNA upstream 8255 11522174 ~ 11522631 (+) True G122467
TU153499 lncRNA upstream 60361 11457644 ~ 11470525 (+) True G122417
TU153579 lncRNA downstream 9644 11543104 ~ 11543621 (+) True G122478
TU153607 lncRNA downstream 151972 11685432 ~ 11686318 (+) True G122501
TU153621 lncRNA downstream 176990 11710450 ~ 11712087 (+) False AMCG00002339
TU153666 lncRNA downstream 182895 11716355 ~ 11716701 (+) True G122549
TU153714 lncRNA downstream 323018 11856478 ~ 11857326 (+) True G122592
AMCG00002314 mRNA upstream 124422 11392955 ~ 11406464 (+) True AMCG00002314
AMCG00002311 mRNA upstream 151318 11367566 ~ 11379568 (+) True AMCG00002311
AMCG00002310 mRNA upstream 171046 11357552 ~ 11359840 (+) True AMCG00002310
AMCG00002307 mRNA upstream 259557 11255732 ~ 11271329 (+) True AMCG00002307
AMCG00002309 mRNA upstream 285906 11214084 ~ 11244980 (+) True AMCG00002309
AMCG00002316 mRNA downstream 31549 11565009 ~ 11587894 (+) True AMCG00002316
AMCG00002323 mRNA downstream 68750 11602210 ~ 11612235 (+) True AMCG00002323
AMCG00002325 mRNA downstream 90321 11623781 ~ 11628341 (+) True AMCG00002325
AMCG00002324 mRNA downstream 103353 11636813 ~ 11644784 (+) True AMCG00002324
AMCG00002331 mRNA downstream 155149 11688609 ~ 11693910 (+) False AMCG00002331
TU153483 other upstream 153148 11376940 ~ 11377738 (+) False AMCG00002311
TU153306 other upstream 936582 10567912 ~ 10594304 (+) False AMCG00002294
TU153130 other upstream 1679580 9844280 ~ 9851306 (+) False AMCG00002272
TU153133 other upstream 1681874 9844280 ~ 9849012 (+) False AMCG00002272
TU152752 other upstream 2768807 8753726 ~ 8762079 (+) False AMCG00002245
TU153583 other downstream 95552 11629012 ~ 11630892 (+) True G122482
TU153608 other downstream 155140 11688600 ~ 11694165 (+) True AMCG00002331
TU153704 other downstream 301979 11835439 ~ 11836169 (+) True G122582
TU153909 other downstream 600326 12133786 ~ 12140465 (+) True G122746
TU154058 other downstream 1524613 13058073 ~ 13061685 (+) False AMCG00002388

Expression Profile