RNA id: TU153579


Basic Information

Item Value
RNA id TU153579
length 352
lncRNA type inter_gene
GC content 0.53
exon number 2
gene id G122478
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11543104 ~ 11543621 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGAACAATCCAGtgacaccccccaccccctgtgtACTGCGTCTGTTTGGTCATCTCTGGGGCTCTTACCTGTGTGGAGGAGTACAGGTGAGTGTATCCCAGTCTGTTGTAGTCTACTTTAAACTGGAACACCCCATACACGTCAGGGAGTTTGAGCTGCACACTGTATTTCccaccTTCTTCCGCAGGTAGGTCCTGACAAAAGGGTCGATCCTCACGAACTCCAGCTGGATGTCATCGCCGTCGAAGGGAACCCACTTCCCCTCGGACAGCTTCTCAATCACGATGGTGTACTCCTGCAGGGACAGACAGACCCACCACAGGTTACTTAACGGTTTAACCGCTCAGTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153569 lncRNA upstream 9644 11530886 ~ 11533460 (+) True G122471
TU153568 lncRNA upstream 15006 11525232 ~ 11528098 (+) True G122470
TU153566 lncRNA upstream 19482 11523227 ~ 11523622 (+) True G122469
TU153565 lncRNA upstream 19990 11522872 ~ 11523114 (+) True G122468
TU153564 lncRNA upstream 20473 11522174 ~ 11522631 (+) True G122467
TU153607 lncRNA downstream 141811 11685432 ~ 11686318 (+) True G122501
TU153621 lncRNA downstream 166829 11710450 ~ 11712087 (+) False AMCG00002339
TU153666 lncRNA downstream 172734 11716355 ~ 11716701 (+) True G122549
TU153714 lncRNA downstream 312857 11856478 ~ 11857326 (+) True G122592
TU153790 lncRNA downstream 351007 11894628 ~ 11898683 (+) True AMCG00002355
AMCG00002314 mRNA upstream 136640 11392955 ~ 11406464 (+) True AMCG00002314
AMCG00002311 mRNA upstream 163536 11367566 ~ 11379568 (+) True AMCG00002311
AMCG00002310 mRNA upstream 183264 11357552 ~ 11359840 (+) True AMCG00002310
AMCG00002307 mRNA upstream 271775 11255732 ~ 11271329 (+) True AMCG00002307
AMCG00002309 mRNA upstream 298124 11214084 ~ 11244980 (+) True AMCG00002309
AMCG00002316 mRNA downstream 21388 11565009 ~ 11587894 (+) True AMCG00002316
AMCG00002323 mRNA downstream 58589 11602210 ~ 11612235 (+) True AMCG00002323
AMCG00002325 mRNA downstream 80160 11623781 ~ 11628341 (+) True AMCG00002325
AMCG00002324 mRNA downstream 93192 11636813 ~ 11644784 (+) True AMCG00002324
AMCG00002331 mRNA downstream 144988 11688609 ~ 11693910 (+) False AMCG00002331
TU153483 other upstream 165366 11376940 ~ 11377738 (+) False AMCG00002311
TU153306 other upstream 948800 10567912 ~ 10594304 (+) False AMCG00002294
TU153130 other upstream 1691798 9844280 ~ 9851306 (+) False AMCG00002272
TU153133 other upstream 1694092 9844280 ~ 9849012 (+) False AMCG00002272
TU152752 other upstream 2781025 8753726 ~ 8762079 (+) False AMCG00002245
TU153583 other downstream 85391 11629012 ~ 11630892 (+) True G122482
TU153608 other downstream 144979 11688600 ~ 11694165 (+) True AMCG00002331
TU153704 other downstream 291818 11835439 ~ 11836169 (+) True G122582
TU153909 other downstream 590165 12133786 ~ 12140465 (+) True G122746
TU154058 other downstream 1514452 13058073 ~ 13061685 (+) False AMCG00002388

Expression Profile