RNA id: TU153748


Basic Information

Item Value
RNA id TU153748
length 1154
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G122621
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11862903 ~ 11864056 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTGACACACCCCTCTGAAATGGCAACACCCTTACTTCAAGGAACAATTGTATTTAGATAAGCTTTTCAGATAGAACAATACCTGAGAGAtcacaaatataatttttatcATTCATAGGTTTTCCTATTTGAGCGCTACAGATTCAGTCGGTAAGGTATAATTTACCTAATGGATGTACTCGAGCCGTACATTACCAAATCACCTGGGGAAGCCATGCTTTGACCGTAATGCAGACTATATGCACAGGGCTGTGCTTTTTTGCTAGTGGCGTATTTCTATACTCGGATCAAAATATTGGCAAATCTGCTGCTATGAGGTTATATGCAATTTAACAAATAGGTAATCCTATAGTTATTGTATTACAGACTACATTATTATGCAGAGATCCACAAAGTCATTGCGCTGTACACTCTGATCCCCATCAAGGCACCTCATGACCAAATGAggcagattttgtgaacaggaaataatttcacagcattaatgtaCAGGTGCTTATGACGTTAATGACGATGTTAACATCAATTATGCAATGCCTGTGCTAGACAGTAGAGTTTCAGATTTTGGATACTACTGTACACTGTACTACTGTATCCATGACTTGACCTCAGTTATATGATCATATGATCTGTGAATCCACCTgcctcatttcaaatattgaacCCAAGTGCCCAGGCTCTGTGCACGACTCAAGAATATTTAGTCTATTGTGTCACAGATCAGGTGTAGGAAATAATCTTATTTGTCAGAAAtcattgcttaaatatttattttattaagtgatCTTATAGTGTTTAGCTCATAGGTCAATATGATAGAATGTCCTGTTAATTTGGctaaaaatgtgaagaaaacatttatatcGGACAGAATAATTAGTACAACATAATActaaagtattatatattttaaaaagcacaatagAAAAATATGACAACGATTCTGATGCAGTCCATGTTATATTCCATTACTACAAGCATGCTgatttaaattggatgtgtgtgaaattattatattgGGGTAAATACATATcttgtgtaataaaacaatatacatttaaaattaagtgattttttGCCATGCTTCCTCTCTGGACTTGGAAGCAGCACTGCCATACAGCAGGACTGGttgaattattgaattaaaGATGTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153766 lncRNA downstream 3578 11857391 ~ 11859325 (-) True G122636
TU153762 lncRNA downstream 14711 11847081 ~ 11848192 (-) True G122633
TU153761 lncRNA downstream 17232 11844392 ~ 11845671 (-) True G122632
TU153668 lncRNA downstream 143934 11718530 ~ 11718969 (-) True G122551
TU153665 lncRNA downstream 146758 11714409 ~ 11716145 (-) True G122548
TU153768 lncRNA upstream 5551 11869607 ~ 11871379 (-) True AMCG00002351
TU153878 lncRNA upstream 179259 12043315 ~ 12045019 (-) True G122726
TU153975 lncRNA upstream 331864 12195920 ~ 12243914 (-) False G122801
TU153974 lncRNA upstream 378065 12242121 ~ 12243914 (-) True G122801
TU154042 lncRNA upstream 1136785 13000841 ~ 13005335 (-) True G122858
AMCG00002350 mRNA downstream 9278 11851517 ~ 11853625 (-) False AMCG00002350
AMCG00002349 mRNA downstream 29080 11830472 ~ 11833823 (-) True AMCG00002349
AMCG00002347 mRNA downstream 41472 11815327 ~ 11821431 (-) True AMCG00002347
AMCG00002352 mRNA downstream 57264 11804054 ~ 11805639 (-) True AMCG00002352
AMCG00002346 mRNA downstream 59159 11800441 ~ 11803744 (-) True AMCG00002346
AMCG00002345 mRNA upstream 558 11864614 ~ 11869352 (-) True AMCG00002345
AMCG00002351 mRNA upstream 7048 11871104 ~ 11872276 (-) False AMCG00002351
AMCG00002357 mRNA upstream 18017 11882073 ~ 11892699 (-) True AMCG00002357
AMCG00002358 mRNA upstream 41854 11905910 ~ 11913015 (-) True AMCG00002358
AMCG00002359 mRNA upstream 49054 11913110 ~ 11918100 (-) True AMCG00002359
TU153763 other downstream 8012 11848470 ~ 11854891 (-) True AMCG00002350
TU153720 other downstream 128579 11731617 ~ 11734324 (-) True G122597
TU153660 other downstream 177814 11667755 ~ 11685089 (-) False AMCG00002327
TU153575 other downstream 335548 11524893 ~ 11527355 (-) False AMCG00002317
TU153139 other downstream 2009828 9842095 ~ 9853075 (-) False AMCG00002279
TU153773 other upstream 7806 11871862 ~ 11872862 (-) False AMCG00002351
TU153859 other upstream 131772 11995828 ~ 12006351 (-) True AMCG00002368
TU154046 other upstream 1164141 13028197 ~ 13029406 (-) False G122862
TU154047 other upstream 1164141 13028197 ~ 13029406 (-) True G122862
TU154299 other upstream 1785172 13649228 ~ 13654236 (-) False AMCG00002421

Expression Profile