RNA id: TU153761


Basic Information

Item Value
RNA id TU153761
length 1252
lncRNA type inter_gene
GC content 0.53
exon number 2
gene id G122632
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11844392 ~ 11845671 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAAACCATCACAGAAAAATGtaactttctttattaaagtCTCCAGTCAGTTACACGTTAAATAATTTTACAGCAGACTATAAACCTGTTCAAAAAGCCAGTCCAGTTATAGAACATTAGCTGATGCTCCGCTCTgatacaatataaatgttagtttttttaacagatGTAAATTTTATTTGTTACAGTAACAAACAGTTCAATAGTTAGTCTTAGTCTTAGAGTTAATATGGGACACCTCCcacccctctttctctctcagttcaTAAAGACAGAATTACAGCAGTTCTGAGAGTACTGTGTGTGCTGTTGCTGTCTGCATACTGGCACAGCTGTTCGTCTTTGATACACACAATACTACACCACAGTCCACATACATGCGACACACGCAACACCGGGCTTGTGTCTGTGCAGCGCCTgtagactgactgacacacagttTGCACACACTGACCcttgctgtgttgtgctgcttGGCACAGGAAAGTCCAGTCTCTGTCCCGACCCGGCGTCCTGGACAATGGTGCTTCAGTGGGGTCCTGAGTTCTGAACCATCTGGAATGTGTCAGAGATACTTCCCCTCCACCTCTACAGCAGGGTGTTGTGGTTCTGCCCCTGGGGCTCCTCAGGAGTCATGTGCTGCcccctgctgtctgtgtgtggtaCAACATTCCTGGTGCGTGTGTACTGTAGTGCTGGCAGTGAGCTCCCCCCGGTGTGTGTCAGTGGTACTACAGCAAGTAAGCTCCCTTTGGGATGTGGGCTCTGTGGGCTCTATGGGCTCTGTGCTGCCGGGTGACAGCACTCCCTGCTGGTGagtgtgtggtgtggtgtgggtACACAGGTCCTGGTGGGGGCTAGTGTGCTCAGGTGTGCCCACAATGCTGCCCGATAGCAAAGGGAGAGTGGAATCCTCCTCATCCAGGCAGTCCAACAGGTCAGAAATGTCAGGGATGTCCCAGCCTCCCCCCCCGCACTCCAGGGCCTCCCCCTCGGTCTCTGTGATGGACAGCTGTCTCTGGACGGTCACACCACTTCTACCTGATCCGCAGTGAGACCCTGCCTCCACCTCAGATGCCCTGCCCACTCCAGATGCCCCCGCTGCTCCTCCAGTAACCCCGTCTTCTTGATCCCCCACAGCTGAGAGTCCCAGCTCATGCTGCTTGTGCTCCCCTGACTCCGTTGCAACAGGTCCTTGCAGCGGTGATTGGCTGTTGTTGGACCACGCCCCCACACGAGTGGCCACGCCCACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153668 lncRNA downstream 125423 11718530 ~ 11718969 (-) True G122551
TU153665 lncRNA downstream 128247 11714409 ~ 11716145 (-) True G122548
TU153646 lncRNA downstream 215957 11601972 ~ 11628435 (-) True G122530
TU153524 lncRNA downstream 394601 11449566 ~ 11449791 (-) True G122438
TU153515 lncRNA downstream 434806 11407524 ~ 11409586 (-) True G122432
TU153762 lncRNA upstream 1410 11847081 ~ 11848192 (-) True G122633
TU153766 lncRNA upstream 11720 11857391 ~ 11859325 (-) True G122636
TU153748 lncRNA upstream 17232 11862903 ~ 11864056 (-) True G122621
TU153768 lncRNA upstream 23936 11869607 ~ 11871379 (-) True AMCG00002351
TU153878 lncRNA upstream 197644 12043315 ~ 12045019 (-) True G122726
AMCG00002349 mRNA downstream 10569 11830472 ~ 11833823 (-) True AMCG00002349
AMCG00002347 mRNA downstream 22961 11815327 ~ 11821431 (-) True AMCG00002347
AMCG00002352 mRNA downstream 38753 11804054 ~ 11805639 (-) True AMCG00002352
AMCG00002346 mRNA downstream 40648 11800441 ~ 11803744 (-) True AMCG00002346
AMCG00002348 mRNA downstream 53656 11787502 ~ 11790736 (-) True AMCG00002348
AMCG00002350 mRNA upstream 5846 11851517 ~ 11853625 (-) False AMCG00002350
AMCG00002345 mRNA upstream 18943 11864614 ~ 11869352 (-) True AMCG00002345
AMCG00002351 mRNA upstream 25433 11871104 ~ 11872276 (-) False AMCG00002351
AMCG00002357 mRNA upstream 36402 11882073 ~ 11892699 (-) True AMCG00002357
AMCG00002358 mRNA upstream 60239 11905910 ~ 11913015 (-) True AMCG00002358
TU153720 other downstream 110068 11731617 ~ 11734324 (-) True G122597
TU153660 other downstream 159303 11667755 ~ 11685089 (-) False AMCG00002327
TU153575 other downstream 317037 11524893 ~ 11527355 (-) False AMCG00002317
TU153139 other downstream 1991317 9842095 ~ 9853075 (-) False AMCG00002279
TU153137 other downstream 2011168 9831911 ~ 9833224 (-) True AMCG00002276
TU153763 other upstream 2799 11848470 ~ 11854891 (-) True AMCG00002350
TU153773 other upstream 26191 11871862 ~ 11872862 (-) False AMCG00002351
TU153859 other upstream 150157 11995828 ~ 12006351 (-) True AMCG00002368
TU154046 other upstream 1182526 13028197 ~ 13029406 (-) False G122862
TU154047 other upstream 1182526 13028197 ~ 13029406 (-) True G122862

Expression Profile