RNA id: TU153762


Basic Information

Item Value
RNA id TU153762
length 1112
lncRNA type inter_gene
GC content 0.56
exon number 1
gene id G122633
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11847081 ~ 11848192 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAGGGGGGAGACTGGGGGTGGTGCTGCAGGGGTCTCTCTGGGGCAGCAGGACTCTGAACTCATTCCCTTCATTCGGTCCTTTACTTATTCATTcccagatgtgtgtgtgtgtatgtgtgtggagtgagtttgtttttgtgtgaatgtgtgtggagtacgtgtgtgtttgtttccctaGTGGGTGTGACCTCTCTGTGACCTGTGACCTCTCTgtaaggggggtggggggtgggctGTCCTACACAATCGCAAGGATTCCCGCCCTATAGACCCCTAAACAGCACCGCACACTAAACATCTgtacactcactcactccctaTAGAGCCCTAAACAGCACCCCTGTGCAACACTGCACACTCAAAACATACAACACACCCCCTATACTGTACTGCTCACTCCCtgtacaacacagcacactttCTGCACTCTCCCCCCAGTACAGCACACAGCCCCAGTGGTTTTCAGCAGTTCCTCTGCAGTCTTCCTAGAGGTGGGGGCAGTGCACATCACACTGCACTCACAGTCACCCCCCCAGTGCAGCCCCTAACCCAGACCCCCTGCTCCCACTGCAACTCCTGTCTTCCTCACCTGCACAAATCTGActggggggtgagagagagagagagagagagagtgagagaggggctgggctgggctggccTGAGTATATCACCACTCACAACATCATTGTATtgggactggactggactagagtGGTATGGACTAGATCTAAGCTGGGTGGCTGGGCTGACTGGGGACTGACCCCCCCACACTGGTCACACtgactgagagagcgagagacgcACACAGGGACACCGAGGGACGCAGAGAGACAACAAGAGAACGACAGGCGACATCACAGCTTTCTGGAAACTCTGGCTGTCTTCCCAGCCCTGTCCGCTTGTCCCTTTGTTCGTCTGTCCAGGGTGTGTTTCAGTCCAAGACTCTATGCTGTGGGCACTAAACTTGCCTGTCCCGAAATGTCCACTCAGCACAGCTGTGAGAGTTTGTGTGGAACAGGACCTGTACTGTGACCCGGGGGGGATATTGACCCAGAGActccaaccccacccccccggccCACCCCCTAGGATCTGGAccctgcccccc

Function

GO: NA

KEGG:

id description
ko05033 Nicotine addiction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153761 lncRNA downstream 1410 11844392 ~ 11845671 (-) True G122632
TU153668 lncRNA downstream 128112 11718530 ~ 11718969 (-) True G122551
TU153665 lncRNA downstream 130936 11714409 ~ 11716145 (-) True G122548
TU153646 lncRNA downstream 218646 11601972 ~ 11628435 (-) True G122530
TU153524 lncRNA downstream 397290 11449566 ~ 11449791 (-) True G122438
TU153766 lncRNA upstream 9199 11857391 ~ 11859325 (-) True G122636
TU153748 lncRNA upstream 14711 11862903 ~ 11864056 (-) True G122621
TU153768 lncRNA upstream 21415 11869607 ~ 11871379 (-) True AMCG00002351
TU153878 lncRNA upstream 195123 12043315 ~ 12045019 (-) True G122726
TU153975 lncRNA upstream 347728 12195920 ~ 12243914 (-) False G122801
AMCG00002349 mRNA downstream 13258 11830472 ~ 11833823 (-) True AMCG00002349
AMCG00002347 mRNA downstream 25650 11815327 ~ 11821431 (-) True AMCG00002347
AMCG00002352 mRNA downstream 41442 11804054 ~ 11805639 (-) True AMCG00002352
AMCG00002346 mRNA downstream 43337 11800441 ~ 11803744 (-) True AMCG00002346
AMCG00002348 mRNA downstream 56345 11787502 ~ 11790736 (-) True AMCG00002348
AMCG00002350 mRNA upstream 3325 11851517 ~ 11853625 (-) False AMCG00002350
AMCG00002345 mRNA upstream 16422 11864614 ~ 11869352 (-) True AMCG00002345
AMCG00002351 mRNA upstream 22912 11871104 ~ 11872276 (-) False AMCG00002351
AMCG00002357 mRNA upstream 33881 11882073 ~ 11892699 (-) True AMCG00002357
AMCG00002358 mRNA upstream 57718 11905910 ~ 11913015 (-) True AMCG00002358
TU153720 other downstream 112757 11731617 ~ 11734324 (-) True G122597
TU153660 other downstream 161992 11667755 ~ 11685089 (-) False AMCG00002327
TU153575 other downstream 319726 11524893 ~ 11527355 (-) False AMCG00002317
TU153139 other downstream 1994006 9842095 ~ 9853075 (-) False AMCG00002279
TU153137 other downstream 2013857 9831911 ~ 9833224 (-) True AMCG00002276
TU153763 other upstream 278 11848470 ~ 11854891 (-) True AMCG00002350
TU153773 other upstream 23670 11871862 ~ 11872862 (-) False AMCG00002351
TU153859 other upstream 147636 11995828 ~ 12006351 (-) True AMCG00002368
TU154046 other upstream 1180005 13028197 ~ 13029406 (-) False G122862
TU154047 other upstream 1180005 13028197 ~ 13029406 (-) True G122862

Expression Profile