RNA id: TU153878


Basic Information

Item Value
RNA id TU153878
length 1343
lncRNA type inter_gene
GC content 0.31
exon number 2
gene id G122726
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 12043315 ~ 12045019 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cctcgttttaactttttttatttgcattgtggTTAAGTCTATTGTAGTACAGTAAAATCAACAATAAACAGTATTGTATCCTACTGTGAGGTGGCTctgcaaattataattatttattgttacacAGATGGAAGGACCAGAATATAATTTcagttatgttattattatcctttaatttaatgaatggcCTGGCATTATGGTAAATAAACCATTCCCTAGCTATTTAGCTTCTTTGTATGTCTctcaataaatatgaataatatatcacattctGTGTAGTCCTCCATATGATGATTACatgtattacattacatataactgcgttacatatatgtattacacATAACtcccaaaatacattttcaatggtTTTCATTATAAAGTTCATGTACACCAAAGATCATTAATGAGACTTGTATTTCTCTGTTTCAAGAAAAAGCAACTTACTTACTAAATATCTTACTTCTTAAGCTTTTCATTCAGGTAACAATCAGCAAGATTTAGTTTTAGACAGTGAACATatgtgctttaattaaaatagctaATTAAGATATGCAATGCTGGTGCTAAAACTACTCATCAAAATAAGCTAAAACCTTACATtccttatacattttttttgcttgaccataaatgttttaatagccAGGGCTAGGAAGCATTGcacttcctttatttttaattcagcctCTGAACCTGAAGGACTGTAGGCATTTATGATTTATTCTTAATATATTCAGTACTTACTAATCATTTCctctgattaatatatatatatatgtatgtatgtatatatttatgcacaCTTGCCGATTTAAATATTAAGCTTGGCCAAGGAAAAAGAGCTACAAAATATTCTAAGACCTGGAAGGAATTTCTATTTTATCTCTAGTTACATAATCACATAATTAAGCCAATTAAGTAAAGGCGAACTCAGTTGAAAAGAAAACTAGGAGACACATCAATGCAAAGGACAATGAGTTTGACATCGCTGATAAACAGACATACACAAGAAGATATAATAATCAGGAAGGTACTGATAAGAGAGTGCTgttatttggttgtttttaaaaatgatcttAAAATGAGTGCTTTTGTGGAAAATTACTCTAACATTGGATTTATTTCTGCTGAACCATTAGGTTGTTTTGTCGTGTTTTCAGGATTCCTCTTTTTAATCCGGCAATACACAGTCATCAGAATCAAACAATGCATGCAAATGTTCCTCCCAGCACACCAGCAGTTAAGGTAATTGATGGCTTATCATTTTGTGTGTCTGGCTCAAAGTAGCAATCTCCATTCTTAGAACATGTACAAATGCCAACTAgtgataaaaacataaa

Function

GO: NA

KEGG:

id description
ko04976 Bile secretion
ko04975 Fat digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153768 lncRNA downstream 171936 11869607 ~ 11871379 (-) True AMCG00002351
TU153748 lncRNA downstream 179259 11862903 ~ 11864056 (-) True G122621
TU153766 lncRNA downstream 183990 11857391 ~ 11859325 (-) True G122636
TU153762 lncRNA downstream 195123 11847081 ~ 11848192 (-) True G122633
TU153761 lncRNA downstream 197644 11844392 ~ 11845671 (-) True G122632
TU153975 lncRNA upstream 150901 12195920 ~ 12243914 (-) False G122801
TU153974 lncRNA upstream 197102 12242121 ~ 12243914 (-) True G122801
TU154042 lncRNA upstream 955822 13000841 ~ 13005335 (-) True G122858
TU154056 lncRNA upstream 1007007 13052026 ~ 13052390 (-) True G122869
TU154065 lncRNA upstream 1022202 13067221 ~ 13067627 (-) True G122877
AMCG00002368 mRNA downstream 36963 11996026 ~ 12006352 (-) False AMCG00002368
AMCG00002359 mRNA downstream 125215 11913110 ~ 11918100 (-) True AMCG00002359
AMCG00002358 mRNA downstream 130300 11905910 ~ 11913015 (-) True AMCG00002358
AMCG00002357 mRNA downstream 150616 11882073 ~ 11892699 (-) True AMCG00002357
AMCG00002351 mRNA downstream 171039 11871104 ~ 11872276 (-) False AMCG00002351
AMCG00002367 mRNA upstream 10622 12055641 ~ 12060552 (-) True AMCG00002367
AMCG00002373 mRNA upstream 37092 12082111 ~ 12096642 (-) True AMCG00002373
AMCG00002377 mRNA upstream 54305 12099324 ~ 12100920 (-) True AMCG00002377
AMCG00002375 mRNA upstream 79179 12124198 ~ 12139756 (-) True AMCG00002375
AMCG00002376 mRNA upstream 94986 12140005 ~ 12142344 (-) True AMCG00002376
TU153859 other downstream 36964 11995828 ~ 12006351 (-) True AMCG00002368
TU153773 other downstream 170453 11871862 ~ 11872862 (-) False AMCG00002351
TU153763 other downstream 188424 11848470 ~ 11854891 (-) True AMCG00002350
TU153720 other downstream 308991 11731617 ~ 11734324 (-) True G122597
TU153660 other downstream 358226 11667755 ~ 11685089 (-) False AMCG00002327
TU154046 other upstream 983178 13028197 ~ 13029406 (-) False G122862
TU154047 other upstream 983178 13028197 ~ 13029406 (-) True G122862
TU154299 other upstream 1604209 13649228 ~ 13654236 (-) False AMCG00002421
TU154543 other upstream 2896241 14941260 ~ 14946311 (-) True G123263
TU154950 other upstream 4791137 16836156 ~ 16839722 (-) True G123585

Expression Profile