RNA id: TU153909



Basic Information


Item Value
RNA id TU153909
length 1249
RNA type TUCP
GC content 0.54
exon number 2
gene id G122746
representative True

Chromosome Information


Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 12133786 ~ 12140465 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CCCAGTCTCTGAAATTAACTGAACACAATGGCAGCCCCTGTCTTCAATGTGCAAACAAATGCATGCCCTCTGTGCTTTGTTTATACAGCATCTGTCCTGATGCGATGAGAGGCGTGGAGAGACGACTCGCCGACGGAGGAACGCAGGGACAAGCGCCAAGGCCCCCCACCCACTCACCAGCAGGCCAGGATGCACAGCGCGGTGAAGAGGATGATGGGCACAGGGTAGGAGGCGCACAGCAGCCCGTGCCGGTAGAAGGCGGCAGAGATGCGCTGGCGCAGGCGCTCGCTCACGGTCATCCTGGGGGTCAGCTGACAGCCATTGGGGAGCGCCGCagagccgggggggggggcgcgGCGGGCATCCAGGGACCTGGGCACACCGAGCACGAActgagcaacaacaacacaagtaatagtcTATTCACGCAACACATgagctgtaaaataatatagattTGGGTAGATATACCACATTCAGGTTCATAGTGGTGCATCTGTCCTTGCTAGACCGGTACATTTCATCGTTATGACAGtcgtgttttgatttaaaattcgGCTTACAGGTACAGGTGCTTACTGGTATGTGTAttcctttctgtttttagtgtataattcaaacatttcattaaaactaggttacttaataaatatgttcatttgcttccattgcttttaaaaatcatgGAGAAGATACCTCCACACTCAACTCCAGCAAAGAGTCTCTACAACACCCAGTGAGAGGAGAAGATGATGATGGGAGGAGGAAAGAGGAAAGATCTACTCCTAAACTGAGCATCAGCCAgtagaatctctctctctgtttccaATCCCATCCAatcctgtgcatctctctcaCGGCAAGTCTGGTGCCCAAAAGCAGAGCGTGCTACGTGACGGAGGAAAGCACTCTCTCAGACTCTTCTGGCTCGGGCTGGGGGCGACTCGAGGATATCACACTGCGGGTGAAGCGCTGAGGTCACTCATCAAAATGACCTTCTCTTGTTGCAGTCCTCCTGTGTCCCTGTGCCCTGACTTGTGCTCCGACCCCTGGGAGACCCACGGCATTTGGGTTCCACTGTGTTGAGGtgcatgtgtgggtgtgttgggGAGCCAGGGGGTCAGAGTGGGAGGGTCACAACACGGCGCTGGAGGTGCCCCTGGCGAAGAAAGACACGCCCCTGTCCTGGATCTTGTACTGCAGGACCCGCCGCCGCTCTGCTGGCCCACTGGCACTGCTGCCCCTCCGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU153906 lncRNA upstream 3039 12129878 ~ 12130747 (+) True G122744
TU153905 lncRNA upstream 4108 12128380 ~ 12129678 (+) True G122743
TU153898 lncRNA upstream 28263 12104670 ~ 12105523 (+) True G122737
TU153860 lncRNA upstream 117702 12011997 ~ 12016084 (+) False AMCG00002360
TU153790 lncRNA upstream 235103 11894628 ~ 11898683 (+) True AMCG00002355
TU154008 lncRNA downstream 232336 12372801 ~ 12373031 (+) True G122829
TU154010 lncRNA downstream 264477 12404942 ~ 12411141 (+) True G122830
TU154049 lncRNA downstream 891311 13031776 ~ 13051971 (+) False AMCG00002390
TU154050 lncRNA downstream 891311 13031776 ~ 13032991 (+) True AMCG00002390
TU154055 lncRNA downstream 911560 13052025 ~ 13052390 (+) True G122868
AMCG00002371 mRNA upstream 12009 12106189 ~ 12121777 (+) True AMCG00002371
AMCG00002372 mRNA upstream 29220 12101806 ~ 12104566 (+) True AMCG00002372
AMCG00002370 mRNA upstream 45962 12081626 ~ 12087824 (+) True AMCG00002370
AMCG00002369 mRNA upstream 52204 12079963 ~ 12081582 (+) True AMCG00002369
AMCG00002365 mRNA upstream 58404 12060756 ~ 12075382 (+) True AMCG00002365
AMCG00002378 mRNA downstream 63556 12204021 ~ 12211319 (+) True AMCG00002378
AMCG00002379 mRNA downstream 86384 12226849 ~ 12241355 (+) True AMCG00002379
AMCG00002381 mRNA downstream 101821 12242286 ~ 12243888 (+) True AMCG00002381
AMCG00002380 mRNA downstream 104258 12244723 ~ 12246989 (+) True AMCG00002380
AMCG00002386 mRNA downstream 498021 12638486 ~ 12696128 (+) True AMCG00002386
TU153704 other upstream 297617 11835439 ~ 11836169 (+) True G122582
TU153608 other upstream 439621 11688600 ~ 11694165 (+) True AMCG00002331
TU153583 other upstream 502894 11629012 ~ 11630892 (+) True G122482
TU153483 other upstream 756048 11376940 ~ 11377738 (+) False AMCG00002311
TU153306 other upstream 1539482 10567912 ~ 10594304 (+) False AMCG00002294
TU154058 other downstream 917608 13058073 ~ 13061685 (+) False AMCG00002388
TU154081 other downstream 984913 13125378 ~ 13129697 (+) True AMCG00002393
TU154987 other downstream 4817696 16958161 ~ 16960082 (+) True AMCG00002500
TU155222 other downstream 5774971 17915436 ~ 17984730 (+) True G123807
TU155458 other downstream 6691549 18832014 ~ 18838531 (+) True G123989

Expression Profile