RNA id: TU153975


Basic Information

Item Value
RNA id TU153975
length 1207
lncRNA type sense_over
GC content 0.51
exon number 3
gene id G122801
representative False

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 12195920 ~ 12243914 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACCGTTGTCTCAAAGTGTGCTTTATTATGTCTGCATGGTGATGATTCAGATTTACAATGATGTTTATTCAGATTTGCAATAATAGCACAAATGCCGCCCCCGGTTTGGCGGGCGTATGGACTGCAAGTGTCCGCCCCTCACACACCGCAGCCGGCCGTGTATTTGCTGAGATCTTTTCCCTTGCACTTGTTGACCCAGCCCACCAGGCTGACATGCCGTTGGGGTCTCTGACCACGCGCTTGGCACAGGTGATGTCTACTCCGATGTTATCAGTCAGCAGCTCTGGAAGGACAAGACAGAGGTGAGGGTCTGGATTGAAAACAGGACCAAAGACCCGTCAGCACTGTGCTGCTCAAACAGGAACTAGAAACGGGCAAACCGCACATTGCACAGGAGAACAGCCAAGGGAACAGACGAGCTAATGgttcgagagagagagagagagagagagagagggagagaaagagcagACTAGGGGAATGGTGACGCAGCCCTCCTCTCAGGAAAGGAGTTGCACACTTCAGGGAGACAGAAGCAGTAAGAGCTCCACTCACGGCTGCATTCGATCCCACAGGCGTTCTTGGATCGGGGGGTTTTGTGATCCTCACACCAATAGCGGCTGTTGATCTGGAAGATGCCGTAGTCGGTGGATTGGTCCCGGTTGTGATTGATGGCCGCGGTGTTGTAACTGGACTCCGCAAAGGCCGTGCACACCCCTGGCAGGACAGCAGCAGGGTTTGCGAAGCAATGCGTTTCAGACAGAGACGCAGGAGAACAATGACATATTCACGTGTCACTTCCAAAAGTTAGTCATGATGCtatgtttctaattttaaatgttggatcaggaaaacaaatattctgtATTATCCTAGAACAAATATAGCCCTGACGTGTATCTTGTgtttactaaaataaattaactttgatAATTTTTTCTGCTACTGAGGCTAATACTGTCTGATTATGTGCACCAGCCCAGTGGCAGTAGAGGAATAGCATCTCAAAGTAGTGtagtccagtgtgtgtgtgctctgtacTCACAGTTGGCCAGGCTGTATCCTCGGTACCCGTCCAGTCCAGCAGCCTTCAGCGTCCTGGCCAGCTCACAGCGCTCATAAGTCTTCCCGTCCACAGAGGACAGGGCCAGGAGGAGCAGAGCAGCCTTCACCAGGAGGGAATGCATGTTGGTGGCGTTCAGGAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153878 lncRNA downstream 150901 12043315 ~ 12045019 (-) True G122726
TU153768 lncRNA downstream 324541 11869607 ~ 11871379 (-) True AMCG00002351
TU153748 lncRNA downstream 331864 11862903 ~ 11864056 (-) True G122621
TU153766 lncRNA downstream 336595 11857391 ~ 11859325 (-) True G122636
TU153762 lncRNA downstream 347728 11847081 ~ 11848192 (-) True G122633
TU154042 lncRNA upstream 756927 13000841 ~ 13005335 (-) True G122858
TU154056 lncRNA upstream 808112 13052026 ~ 13052390 (-) True G122869
TU154065 lncRNA upstream 823307 13067221 ~ 13067627 (-) True G122877
TU154067 lncRNA upstream 824920 13068834 ~ 13069238 (-) True G122879
TU154087 lncRNA upstream 897954 13141868 ~ 13147672 (-) True G122897
AMCG00002374 mRNA downstream 24239 12145146 ~ 12171681 (-) True AMCG00002374
AMCG00002376 mRNA downstream 53576 12140005 ~ 12142344 (-) True AMCG00002376
AMCG00002375 mRNA downstream 56164 12124198 ~ 12139756 (-) True AMCG00002375
AMCG00002377 mRNA downstream 95000 12099324 ~ 12100920 (-) True AMCG00002377
AMCG00002373 mRNA downstream 99278 12082111 ~ 12096642 (-) True AMCG00002373
AMCG00002384 mRNA upstream 4233 12248147 ~ 12248946 (-) True AMCG00002384
AMCG00002383 mRNA upstream 7378 12251292 ~ 12260406 (-) True AMCG00002383
AMCG00002385 mRNA upstream 239980 12483894 ~ 12504026 (-) True AMCG00002385
AMCG00002389 mRNA upstream 738915 12982829 ~ 12997422 (-) True AMCG00002389
AMCG00002392 mRNA upstream 788715 13032629 ~ 13044363 (-) True AMCG00002392
TU153859 other downstream 189569 11995828 ~ 12006351 (-) True AMCG00002368
TU153773 other downstream 323058 11871862 ~ 11872862 (-) False AMCG00002351
TU153763 other downstream 341029 11848470 ~ 11854891 (-) True AMCG00002350
TU153720 other downstream 461596 11731617 ~ 11734324 (-) True G122597
TU153660 other downstream 510831 11667755 ~ 11685089 (-) False AMCG00002327
TU154046 other upstream 784283 13028197 ~ 13029406 (-) False G122862
TU154047 other upstream 784283 13028197 ~ 13029406 (-) True G122862
TU154299 other upstream 1405314 13649228 ~ 13654236 (-) False AMCG00002421
TU154543 other upstream 2697346 14941260 ~ 14946311 (-) True G123263
TU154950 other upstream 4592242 16836156 ~ 16839722 (-) True G123585

Expression Profile