RNA id: TU154008


Basic Information

Item Value
RNA id TU154008
length 231
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G122829
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 12372801 ~ 12373031 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

caagtcttcaaaatcatgaaaggcatcgaccacatcaaaccagaggagcttttccagatcagcagggacacacgcacccggggacacaaatggaaattgggcttcaaggcattcaagacagaaaacaggagacacttcttcacacagagagtcgtcacaatctgaacaaactccccagcgatgtggctgaagagacaatttgggaacattcaaaaacagactggataggat

Function

GO:

id name namespace
GO:0097458 obsolete neuron part cellular_component
GO:0001917 photoreceptor inner segment cellular_component

KEGG:

id description
ko04744 Phototransduction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153906 lncRNA upstream 242054 12129878 ~ 12130747 (+) True G122744
TU153905 lncRNA upstream 243123 12128380 ~ 12129678 (+) True G122743
TU153898 lncRNA upstream 267278 12104670 ~ 12105523 (+) True G122737
TU153860 lncRNA upstream 356717 12011997 ~ 12016084 (+) False AMCG00002360
TU153790 lncRNA upstream 474118 11894628 ~ 11898683 (+) True AMCG00002355
TU154010 lncRNA downstream 31911 12404942 ~ 12411141 (+) True G122830
TU154049 lncRNA downstream 658745 13031776 ~ 13051971 (+) False AMCG00002390
TU154050 lncRNA downstream 658745 13031776 ~ 13032991 (+) True AMCG00002390
TU154055 lncRNA downstream 678994 13052025 ~ 13052390 (+) True G122868
TU154064 lncRNA downstream 694234 13067265 ~ 13067635 (+) True G122876
AMCG00002380 mRNA upstream 125812 12244723 ~ 12246989 (+) True AMCG00002380
AMCG00002381 mRNA upstream 128913 12242286 ~ 12243888 (+) True AMCG00002381
AMCG00002379 mRNA upstream 131446 12226849 ~ 12241355 (+) True AMCG00002379
AMCG00002378 mRNA upstream 161482 12204021 ~ 12211319 (+) True AMCG00002378
AMCG00002371 mRNA upstream 251024 12106189 ~ 12121777 (+) True AMCG00002371
AMCG00002386 mRNA downstream 265455 12638486 ~ 12696128 (+) True AMCG00002386
AMCG00002391 mRNA downstream 648536 13021567 ~ 13024109 (+) True AMCG00002391
AMCG00002390 mRNA downstream 658728 13031759 ~ 13032761 (+) False AMCG00002390
AMCG00002388 mRNA downstream 671662 13044693 ~ 13070832 (+) True AMCG00002388
AMCG00002387 mRNA downstream 698395 13071426 ~ 13085078 (+) True AMCG00002387
TU153909 other upstream 232336 12133786 ~ 12140465 (+) True G122746
TU153704 other upstream 536632 11835439 ~ 11836169 (+) True G122582
TU153608 other upstream 678636 11688600 ~ 11694165 (+) True AMCG00002331
TU153583 other upstream 741909 11629012 ~ 11630892 (+) True G122482
TU153483 other upstream 995063 11376940 ~ 11377738 (+) False AMCG00002311
TU154058 other downstream 685042 13058073 ~ 13061685 (+) False AMCG00002388
TU154081 other downstream 752347 13125378 ~ 13129697 (+) True AMCG00002393
TU154987 other downstream 4585130 16958161 ~ 16960082 (+) True AMCG00002500
TU155222 other downstream 5542405 17915436 ~ 17984730 (+) True G123807
TU155458 other downstream 6458983 18832014 ~ 18838531 (+) True G123989

Expression Profile