RNA id: TU154042


Basic Information

Item Value
RNA id TU154042
length 375
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id G122858
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 13000841 ~ 13005335 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGCCTCTGCAGACCTACGGGGAGAAGAGCATCCCTGGGGTTTGCGTAGTGTGTCGATTTATTGTGAAGAGGAACTTtaccagaaaataaaaccaagGAGGCAATCGTTGAGAAACTGCATTCCGTGTGCAACATCATGCGCTTCCTGAAAGCCGCTTGCACGAGGGTTATTGGCCGCTATTCTGGCAATTTGGCTGATGCCCTCATGGCCAGCTCTGACCCAAGAGAAGTCTGTCGTCAAGTGAAACTTTGCAAGTGACAGAAAACAATTGCAGaaAGCCCTGATTCGGGAGGTCTCGGTGGACTGATGGTCGGGAGGGCTCTGAAATCCTCACATGGTGAAATATAAATCTcaataaagcattaaaaaaactt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153975 lncRNA downstream 756927 12195920 ~ 12243914 (-) False G122801
TU153974 lncRNA downstream 756927 12242121 ~ 12243914 (-) True G122801
TU153878 lncRNA downstream 955822 12043315 ~ 12045019 (-) True G122726
TU153768 lncRNA downstream 1129462 11869607 ~ 11871379 (-) True AMCG00002351
TU153748 lncRNA downstream 1136785 11862903 ~ 11864056 (-) True G122621
TU154056 lncRNA upstream 46691 13052026 ~ 13052390 (-) True G122869
TU154065 lncRNA upstream 61886 13067221 ~ 13067627 (-) True G122877
TU154067 lncRNA upstream 63499 13068834 ~ 13069238 (-) True G122879
TU154087 lncRNA upstream 136533 13141868 ~ 13147672 (-) True G122897
TU154142 lncRNA upstream 280002 13285337 ~ 13286312 (-) True G122942
AMCG00002389 mRNA downstream 3419 12982829 ~ 12997422 (-) True AMCG00002389
AMCG00002385 mRNA downstream 496815 12483894 ~ 12504026 (-) True AMCG00002385
AMCG00002383 mRNA downstream 740435 12251292 ~ 12260406 (-) True AMCG00002383
AMCG00002384 mRNA downstream 751895 12248147 ~ 12248946 (-) True AMCG00002384
AMCG00002382 mRNA downstream 797815 12185034 ~ 12203026 (-) True AMCG00002382
AMCG00002392 mRNA upstream 27294 13032629 ~ 13044363 (-) True AMCG00002392
AMCG00002398 mRNA upstream 88729 13094064 ~ 13102528 (-) True AMCG00002398
AMCG00002395 mRNA upstream 113145 13118480 ~ 13121283 (-) True AMCG00002395
AMCG00002399 mRNA upstream 146254 13151589 ~ 13152326 (-) True AMCG00002399
AMCG00002396 mRNA upstream 147033 13152368 ~ 13179775 (-) True AMCG00002396
TU153859 other downstream 994490 11995828 ~ 12006351 (-) True AMCG00002368
TU153773 other downstream 1127979 11871862 ~ 11872862 (-) False AMCG00002351
TU153763 other downstream 1145950 11848470 ~ 11854891 (-) True AMCG00002350
TU153720 other downstream 1266517 11731617 ~ 11734324 (-) True G122597
TU153660 other downstream 1315752 11667755 ~ 11685089 (-) False AMCG00002327
TU154046 other upstream 22862 13028197 ~ 13029406 (-) False G122862
TU154047 other upstream 22862 13028197 ~ 13029406 (-) True G122862
TU154299 other upstream 643893 13649228 ~ 13654236 (-) False AMCG00002421
TU154543 other upstream 1935925 14941260 ~ 14946311 (-) True G123263
TU154950 other upstream 3830821 16836156 ~ 16839722 (-) True G123585

Expression Profile