RNA id: TU154064


Basic Information

Item Value
RNA id TU154064
length 371
lncRNA type intronic
GC content 0.47
exon number 1
gene id G122876
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 13067265 ~ 13067635 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

taaaaactctttgaagtggacgagagccgaaatcccgacatagagctacgaacccgggccaaccggcatttccaaaagatggcatggattgacatcagtcataaatcaagcccccctccaataggacactgggggctgaaaccgaaatccaatctcaaaaactcaagaaccaatcacctattgatctgacagactataaagaacagcgcacagtctctttctctctctctctcacctgaaccagaaacttgctgccacagctcaacctgtagctctgttgcccgaaccggaaccagaaaccaactaagtctttgccggcaacagaagagttaaacagggaaaaggagattgagccgtacgaagaattcttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154055 lncRNA upstream 14875 13052025 ~ 13052390 (+) True G122868
TU154049 lncRNA upstream 15294 13031776 ~ 13051971 (+) False AMCG00002390
TU154050 lncRNA upstream 34274 13031776 ~ 13032991 (+) True AMCG00002390
TU154010 lncRNA upstream 656124 12404942 ~ 12411141 (+) True G122830
TU154008 lncRNA upstream 694234 12372801 ~ 12373031 (+) True G122829
TU154105 lncRNA downstream 120314 13187949 ~ 13188278 (+) True G122911
TU154108 lncRNA downstream 121647 13189282 ~ 13189862 (+) True G122914
TU154127 lncRNA downstream 237062 13304697 ~ 13305599 (+) True G122929
TU154271 lncRNA downstream 478429 13546064 ~ 13546300 (+) True G123039
TU154275 lncRNA downstream 498779 13566414 ~ 13570811 (+) True G123041
AMCG00002390 mRNA upstream 34504 13031759 ~ 13032761 (+) False AMCG00002390
AMCG00002391 mRNA upstream 43156 13021567 ~ 13024109 (+) True AMCG00002391
AMCG00002386 mRNA upstream 371137 12638486 ~ 12696128 (+) True AMCG00002386
AMCG00002380 mRNA upstream 820276 12244723 ~ 12246989 (+) True AMCG00002380
AMCG00002381 mRNA upstream 823377 12242286 ~ 12243888 (+) True AMCG00002381
AMCG00002387 mRNA downstream 3791 13071426 ~ 13085078 (+) True AMCG00002387
AMCG00002394 mRNA downstream 21781 13089416 ~ 13090383 (+) True AMCG00002394
AMCG00002393 mRNA downstream 57743 13125378 ~ 13129649 (+) False AMCG00002393
AMCG00002400 mRNA downstream 73032 13140667 ~ 13141587 (+) True AMCG00002400
AMCG00002401 mRNA downstream 123394 13191029 ~ 13194076 (+) True AMCG00002401
TU154058 other upstream 5580 13058073 ~ 13061685 (+) False AMCG00002388
TU153909 other upstream 926800 12133786 ~ 12140465 (+) True G122746
TU153704 other upstream 1231096 11835439 ~ 11836169 (+) True G122582
TU153608 other upstream 1373100 11688600 ~ 11694165 (+) True AMCG00002331
TU153583 other upstream 1436373 11629012 ~ 11630892 (+) True G122482
TU154081 other downstream 57743 13125378 ~ 13129697 (+) True AMCG00002393
TU154987 other downstream 3890526 16958161 ~ 16960082 (+) True AMCG00002500
TU155222 other downstream 4847801 17915436 ~ 17984730 (+) True G123807
TU155458 other downstream 5764379 18832014 ~ 18838531 (+) True G123989
TU155541 other downstream 6062768 19130403 ~ 19132358 (+) False AMCG00002561

Expression Profile