RNA id: TU154067


Basic Information

Item Value
RNA id TU154067
length 405
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G122879
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 13068834 ~ 13069238 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCGTCTGTTTTACCCATTGACATTCGTCCTCTGCTTCTATTTGATGAGGCAGAAGGCGGGGCTAGTGACGGTTAGCTTCCGGGGAAAGGATCTCGCCAATCAGAGAGCTGCAAAAAGCAATTGGTCAGCCTGCTTCAGCACAGCCAATGGGAGTGCTCGAGAGGCGGGGCTTGTGACTGCGCGGTTTATTGTGAAGAAGAATGGAGGACGCGGTACGAGGGCAGGTTTCACAGTGTAGTGCTTAATCTGGACAGTGATCGGGGGCGAATTAAAGCCCTAATTCATGAAATCAACACACGCAACCGATGATTGAGCGGCGGAAGCAGAGCAGTTATTTTCTGGGTGTTGTATTCTTTACCCGGAGGCTGGCCCGGACAGGATGAGCTCGTCGCGGGAGATCAAGC

Function

GO:

id name namespace
GO:0005657 replication fork cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154065 lncRNA downstream 1207 13067221 ~ 13067627 (-) True G122877
TU154056 lncRNA downstream 16444 13052026 ~ 13052390 (-) True G122869
TU154042 lncRNA downstream 63499 13000841 ~ 13005335 (-) True G122858
TU153975 lncRNA downstream 824920 12195920 ~ 12243914 (-) False G122801
TU153974 lncRNA downstream 824920 12242121 ~ 12243914 (-) True G122801
TU154087 lncRNA upstream 72630 13141868 ~ 13147672 (-) True G122897
TU154142 lncRNA upstream 216099 13285337 ~ 13286312 (-) True G122942
TU154145 lncRNA upstream 219803 13289041 ~ 13289249 (-) True G122945
TU154146 lncRNA upstream 220070 13289308 ~ 13289916 (-) True G122946
TU154147 lncRNA upstream 221888 13291126 ~ 13291819 (-) True G122947
AMCG00002392 mRNA downstream 24471 13032629 ~ 13044363 (-) True AMCG00002392
AMCG00002389 mRNA downstream 71412 12982829 ~ 12997422 (-) True AMCG00002389
AMCG00002385 mRNA downstream 564808 12483894 ~ 12504026 (-) True AMCG00002385
AMCG00002383 mRNA downstream 808428 12251292 ~ 12260406 (-) True AMCG00002383
AMCG00002384 mRNA downstream 819888 12248147 ~ 12248946 (-) True AMCG00002384
AMCG00002398 mRNA upstream 24826 13094064 ~ 13102528 (-) True AMCG00002398
AMCG00002395 mRNA upstream 49242 13118480 ~ 13121283 (-) True AMCG00002395
AMCG00002399 mRNA upstream 82351 13151589 ~ 13152326 (-) True AMCG00002399
AMCG00002396 mRNA upstream 83130 13152368 ~ 13179775 (-) True AMCG00002396
AMCG00002397 mRNA upstream 113483 13182721 ~ 13186037 (-) True AMCG00002397
TU154046 other downstream 39428 13028197 ~ 13029406 (-) False G122862
TU154047 other downstream 39428 13028197 ~ 13029406 (-) True G122862
TU153859 other downstream 1062483 11995828 ~ 12006351 (-) True AMCG00002368
TU153773 other downstream 1195972 11871862 ~ 11872862 (-) False AMCG00002351
TU153763 other downstream 1213943 11848470 ~ 11854891 (-) True AMCG00002350
TU154299 other upstream 579990 13649228 ~ 13654236 (-) False AMCG00002421
TU154543 other upstream 1872022 14941260 ~ 14946311 (-) True G123263
TU154950 other upstream 3766918 16836156 ~ 16839722 (-) True G123585
TU155250 other upstream 4853214 17922452 ~ 17989465 (-) True G123829
TU156333 other upstream 10016756 23085994 ~ 23153164 (-) True G124719

Expression Profile