RNA id: TU154087


Basic Information

Item Value
RNA id TU154087
length 5805
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G122897
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 13141868 ~ 13147672 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTAGTTTGTCAACACTTTATTGAatagtaacaataaaaaaagaacatttgcattgaaattcaatgacaacaacagcaacaaaaaacctgtgacagtttgtttgttttcaagttttctcaacatacaatacaacagaaaaataGGAAGTGACTTCACAAAAGTCACTCCACGTACAGATCCGCATTATCGCACATCCTCAGGTAACCGTGGACACGAAAGACTGGAAAAGTGGTCGCTCATATCAATGGTTACTGCCAACAGATGAGCTGATTGACAGGTTTTGCCTCAGCATTTACATTATGGGACAGCTGAGAGGGTGGGAGCTGGGCTGGTGACCAGGGAACAGGTGAACCCCAAGGCAACTGAAACCACACAGGGCTCTGAGCGTCTTTAGGAGTGTCCACTCTGACTCAGCATAGCAGTGGGGTAGAAACAGCCCAGTCAGCAGGGTGTACAGTGGCACCTGATGGGGCAACAGAGCTGGGTCAGTGCCAGGGGGCTGGGCAGGGATTCCTCTTGCAAACTGCTCTTTTATTTATGCAAAAAGAACAGTAAGAAATGTATTCCCTGCTTTCCCAGTAATTCAGTGGATGGGAGAAAATTGGACACTGGTCTTCATGTACAGCATTAGTAAAGAGGTACaagacatattttgtttatgcatCTTGAAATGCTCCATAATCACACAATAAGAATAACAGTAGCAATAAAGAGTACATGGCTGACATCTTTCACATACGGAGGCTGTTAATAGAGAACCATGTTGTGTTTCACTTTTCCGTATTTCTCAAACTTGTCTGTTCTTGCACAGCACCCCAGGTTTCACAACCCTGTGTactgcagacagagacagacgcGAGGGCAGTAAGGCAGTGGCTGCAGGTCACACACTGTGAGTGTCACCATCTCTGACCGCAGTCTGCCCTCCCTCTCAGCCCCCAAATCCTTATTCACCTGCTTCTCAGTTagaagtatttatattttcccagAGACATGATCATTTCTCAGTCTTTCAGCCAGTTCTTGCACACTGATCTGTGCTTCTGggtatttatatactgtatgtgtgtgtgtgtgtgtgtgtgtgtatacacacacacacacacacacgcaataacaaaataacagatAAACGTGACGTTTTTAAAACAGCTTTGACATTGGTCAAAAGTCACGTGCTTCAAGATTTTTTAGCTGCAGAAGATGAGACGAAggaaatctgtatttaaaataaaataaaaataaaaaataatacatttgaagattCCAACCTGTCTTGGCAAACacaaattttaataataataataataataataatactgataagaTATCTCCCCAAAATGGGATAAACCAGtgcatctttttctttctttttaagttaacaaaaacaaaccatttcaatttaactacagaaacaataaaaaaaaatacctgaaaCACCTATTAAATGACTGCCAGCATGCACACCATCACAGTAGCAAGACATTgcgtaggttttttttttgtgagtgtttttttgttttttctcagtcTGCAACATATTTACACTGTCCTGTTTTACATTCACAGGCATGCAGATACTGAGAGACTGGTCACTGAGCTGGACAACGATATAGCAGCAAAACTCGCATTGCCACAACTCACAGAGTTGCGACTTTTTCCACAGACAGGTTTGAGTTTTTAATTCTAGTTTCCtctcccctccacccccccagtCACAGGGATTTGGGAATGAGAAGGAAAGGTGAGGAAGGGTCAAAGTCAATCCCTGCAAGGGCAACATTATCCTGAACCGATGGGATAAACCAGCActtcagaaacacagagcacagagagggggggacagggaCGGGGACGGGGATAAAGACAGAGATTGCGAGTGCAGGAGTGTCAGGTGCAGCTCCCATTTCCAGGGACACTCTTCAGATGTATTCTGGAAGATTTAGTACATGTAGACTGGTCTTTACAAGGTGTCTCTTTTAACAATGCTGTGGATTgttaaaacaataagaaaaggAATACATGATCTTATTTGTTCCACTTGTCTCTTGATGCTGGGACCAGCTGGCAGAGCATGCAATGAAGGAGTGGAGCGGGGGGGCAGAGAGGGGGCCACCTGGGCCCAGCAGCACAGTAccagcatcacacacacacactctgaatcACTGCCTTCTGGGAGCCTGCGGGGGGCAATGGAAACAATTGAGGGGGATTCCAAAATGTGTGTGGTGCACCTGTAGTCCCCTTCCCTTCTCCCCTCATGTGCATAGTCAACTATTTAACATATGCACACAGTTTCCATAATCACAAGGAGTGGTTAAATTACTCCCAGGCCTAATTAGTGTTAAATATTTCCACAATCGAAGagggaacaaaaaccagaagcaGCAGCTGTCACTAAGCAAATACTGCTATTGCAACCCACAGGCCATTGCCCACCGGGGACACTTTCAACTGCGAGGCCTGCCCACAGAGAAGATGGTCCCAGGTCCCCAACACTGGCTGCCCTTCTTGAGAGGGAACAAGCAGCGTGTTTGTGCGCCGCCCTGCACAGGTTAATGTATCTGGcagcaacagaaaacagaacagcTTTGTCTTCGCTCTGCAGAGGCCAGCAGGGTGTGTGGAGAGCATCGATCCATGGCGCAGAGAAGGTCAGGCACAAGAAAAGGCCATTCAGCCGCAGGCGAGCTGGTCCTGCCTGGTGAGAGCGCAGGCTGTGTGCCTGGCCTGCCCCCCTGCCTGCTGCCCTGAAAGCCCCCAGTGTATCAGCTCTGACAGCCCAGCCTGATTGCGCTGAATGAGCGAGGAAGACACTGTCTCCTGCGCCCCCCTCCGTCTGCCTTTCTCCATCTCGCTCCCCCTGCTGTCCTGCCCTGCGCTGCTATTGTCTCAGTCCTGGAAAGCCACCAGTTGTGCTTTATTGcgaaaagagaaagagagacagaaaaagaaaggaaggatAAGGATTTTCAGGCACTTCCTTAAGAATGCTGAATCCATgacttccttttctttctctccctctcaagCCCTCTCTACTGCCCACCacctcacccctctctctctctctctctctcggtctccaGGCCCCATGGTTATGCTAGGGTTATTGTTGGAGTTCTTTACCCCCAGGACAGCTGTGCTCATGTCGATAGGATTAAGGCGTAAGTTCAGGTTGTGCTAACATGACAACCACTACACCCCCTCCCTGCCATAGACCCCCAGATAACATTGCTCTCTCTGCTGaggatgacacacacacacacacacaaccggATTTACTGCGCAGTGACAAGACCTCTCAAGCTCACAGATGacatctccctctctcacaaAGGAACCTGAAGATTGTATTTTCAGCTTTACAAGAATTGCGCTCTCTCTGATCTACCCTGCAATggatttttccccccttctggTGGGTCAGAGAGCCTGTATGCCTCACATAGTCAGAACAGAACTAAACCGAATGAAAGACTGGGATCCCCCACTCCATTAACGGGACCAGTGGTGTCTTGGATTCTGCTGGCGAGAGGAGACCTGAATCCTGCAGCAGGACAGTGTGCCCCTGTGGCCACAGCGAGGGTTGATGAgaaggagatggagggaggaggagaggaggagagcaggaGGTCTGTATGTTTCTCCACAGAGTTGCTTGTTCACATCTGTGTTATCTACTCCTCTACGGACACAGCTCTGTAGTCAGTCCCCGCTCTGATACAAAATGTCACAGAGAGTAAAGGACTGCAATCGCAGGGGGACACTGACAGGCAAAGACTGAGCTCCCCCCCCACAGCACTCTCTCTCGCTTGCCATCCCaatgtctccatctctctccctccctgtgaTGCAAGCATCCACATTGTCATGGAAACTCAAGTTTTATGTCCACAAATAGCACACACGTCTCCGCTTCTCTCCCGATCTCTTGCTCCCTTGCTTGTCTTtttcctacacacacacacaaacacacactccgATCACCTCCCTGCAATAAGGGCACTGGGCTCAGCTGGCAGGTTCACATTACACTGACAGGGGACGACAATTACTGTAATTTGTAAGagacaaacaacaaaagaaaaatgcaatcatGCAAGCCTCacagggaaaaagaaaactaaacccCTGGCTGTGGTATAGTTACATGTATACCTGCAGCCAGAGATGCACAGTTTTCACACTGCCTGCTTGAATGAATATTTACCCACTTGTAGTGTATATGCCAGTTAATACTTCTGCTTCTGTTTAGGCAATAAATACAGACATCCAtccacactcactcactcctaGTTTGTGAGCTCTGCGCATCCGTGCTGAAGGCAAATGAACTGACATCGTTAGTTTGCTTTCAgcgcagacacacgcacacacacacattcacacatgtGTACACAAGCACAATCAGGGAGCCCCAATTAAATtagcaaatatggatttgtttttgctaGAGGGGAATAAACACACGAGATCTTGGAAGTGCATGGCATGCCGTGCCATGCATTAAGCCCAAATAGTGGGGATTAGAGGTGGAATTGATCATTAATCTGCTAATCCCATTAAATGAACTATGGCAACTATGCTGACGACAGCGCAGGACAAACTGGGCCACAACAGACAAGACAAAAAGTCTCCCAGTGTAACCTGCAACACTGATTGACAGCTCACAGTCAAAAAATAGGCACTGGGCTCCAACTGCAGACCACCCACTGTTAAATTGCCCAGGGCAAGGGGCTCCCTGAGGGCATTCTCTCCCCATCCTGCTACCATTGCCTTTCCTCCTGGAGTTTATGAAACACGTTGCCATTCTGAGCTCTAGGGCTGCTGATATTTGCTCTTGAAAACCAGACGTCTGCTGCGATTTTGTCTGGATTTCAGTAAGCGCTGGAGGTAACAGTGTCTCGCATGGAGGACTGCAGTGAAATTATTCTTCACAGTCTCTCCAAGATAGTGCtagagcaatatatatatatatatgctagaCTACACTGCCTGCAAACAATCAGCCTGTTACTAGGTCACAGAATCCAGCACAGGTCGAGAACTAATATgaggtaaataaaataagttttggCAGAAATGTAGCAGAGAAGACTGGCGACTCCCCCGATCAAAGGTACAAAGTCAATCACTAAACGTGCCTGGTGGGAAACACAGGGAAACTAACCAGTCTCTGATGTCACAACAACAGGCTGATTGCCATTAGAGTGTGCGTTTACTGTGGGATCAATCTCGTACAAAGTGCATCAGTTTCACAGGGAACTGatctgtttattgatttatcgTCTGTCGTGGGCACAGTAGCCAGACTCCAGTCCCAGCTTCCGCTGCATCGTGAAGGCCTGCACGGTTTGACCAATTGTCTGTAAACAGTGCAAGGAGCTCAGAATGGCTGCACACTAAAGCATGGTAGGGGCGAGGGAACTAAAACAACAGGAGTGAGGCGGGTGGAGGGACCAGCACATCGCATGTCAGAGAGCGGGCAGGACAAGCAAAGTCGCATGTCAAAGGGGAGCCCTGCAGAGCTTCAACAGTCTTTTCAAGTACAGTCAGGTCATGTATCGAGTGTGGGGGTGGGAGTGGAGCCACCGCCAGTGTGTCCAGATTGAAGAACTGCGAGAGAGACTATGAGGAGGTGTTGGGTGCGCAGCTGCATGGGTCAGCAGTTTGATCAACTGGTGTACTCTGGGCTGCTTTTGTACCTGTAAGCATTCCACACGCAGTCCACAAGCACCATAGACCagtaatcaataataatacaattaaataaataaaactagtaCATTAGACTTGGGAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154067 lncRNA downstream 72630 13068834 ~ 13069238 (-) True G122879
TU154065 lncRNA downstream 74241 13067221 ~ 13067627 (-) True G122877
TU154056 lncRNA downstream 89478 13052026 ~ 13052390 (-) True G122869
TU154042 lncRNA downstream 136533 13000841 ~ 13005335 (-) True G122858
TU153975 lncRNA downstream 897954 12195920 ~ 12243914 (-) False G122801
TU154142 lncRNA upstream 137665 13285337 ~ 13286312 (-) True G122942
TU154145 lncRNA upstream 141369 13289041 ~ 13289249 (-) True G122945
TU154146 lncRNA upstream 141636 13289308 ~ 13289916 (-) True G122946
TU154147 lncRNA upstream 143454 13291126 ~ 13291819 (-) True G122947
TU154148 lncRNA upstream 144649 13292321 ~ 13292568 (-) True G122948
AMCG00002395 mRNA downstream 20585 13118480 ~ 13121283 (-) True AMCG00002395
AMCG00002398 mRNA downstream 39340 13094064 ~ 13102528 (-) True AMCG00002398
AMCG00002392 mRNA downstream 97505 13032629 ~ 13044363 (-) True AMCG00002392
AMCG00002389 mRNA downstream 144446 12982829 ~ 12997422 (-) True AMCG00002389
AMCG00002385 mRNA downstream 637842 12483894 ~ 12504026 (-) True AMCG00002385
AMCG00002399 mRNA upstream 3917 13151589 ~ 13152326 (-) True AMCG00002399
AMCG00002396 mRNA upstream 4696 13152368 ~ 13179775 (-) True AMCG00002396
AMCG00002397 mRNA upstream 35049 13182721 ~ 13186037 (-) True AMCG00002397
AMCG00002403 mRNA upstream 49153 13196825 ~ 13213803 (-) True AMCG00002403
AMCG00002404 mRNA upstream 71936 13219608 ~ 13227144 (-) True AMCG00002404
TU154046 other downstream 112462 13028197 ~ 13029406 (-) False G122862
TU154047 other downstream 112462 13028197 ~ 13029406 (-) True G122862
TU153859 other downstream 1135517 11995828 ~ 12006351 (-) True AMCG00002368
TU153773 other downstream 1269006 11871862 ~ 11872862 (-) False AMCG00002351
TU153763 other downstream 1286977 11848470 ~ 11854891 (-) True AMCG00002350
TU154299 other upstream 501556 13649228 ~ 13654236 (-) False AMCG00002421
TU154543 other upstream 1793588 14941260 ~ 14946311 (-) True G123263
TU154950 other upstream 3688484 16836156 ~ 16839722 (-) True G123585
TU155250 other upstream 4774780 17922452 ~ 17989465 (-) True G123829
TU156333 other upstream 9938322 23085994 ~ 23153164 (-) True G124719

Expression Profile