RNA id: TU154147


Basic Information

Item Value
RNA id TU154147
length 694
lncRNA type inter_gene
GC content 0.60
exon number 1
gene id G122947
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 13291126 ~ 13291819 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTGGGTTGGAGGTGTTGGAGGTGTTGTCCCCAGGCAGGTGCTCAGTGCTGTAGCTGCTGTCGTCCAGCACGTTGGACAGGCTGGAGCTCTTGCGCGCCCGCAGGCCGGGGAATGGCTTGCAGGTCTCCAGGGGGGAGGGTGTGTCGGCCTGGCTCACAGGGGTCTGCGAGCCCGTGCCCTCCCCAAGCTCCAGCCCCAGTTCGAAGGGGGAACTGCCAAAGGGGGACAGGGGTAGGTAGGGGCCCTGGTCAAAGTCAGACTGGACTGTGGGGATGTCCACAGCGTTGGACTGCGAGGACGACTGGCTGGCCAGCTCCATCGAGTCAAAGGACTTGAAGTTCATGGAGTTGGCTAAGCTCTTCATTTGACTGCCGTTGACAGGGGACAGGGACATGTCAGAGAAACCCTCCGAGATGTCTTGAGGGTCCTTCTGCGCCTTgacctcctcttcctcctcctccattctGAATGTTGGGAAGACATCGGTGGGCGTCTCCACTAGTACCACATTGTCCTGTCTCTGGAGGCTGGGCCGAGAGCTGTCCAAGGAGCTGGGATTGGAGTCAGAAAAGCTGGTGGCGCGGGACTCGTATGACTCCTTCACGTACAGCTTGGTCAGTGTGTCCTGCCAGCCGAGCTGCCGTGCCAGCTGCCTGACATTGTCCTCGCTTGAGTAGATCAAGTGAAACAGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154146 lncRNA downstream 1210 13289308 ~ 13289916 (-) True G122946
TU154145 lncRNA downstream 1877 13289041 ~ 13289249 (-) True G122945
TU154142 lncRNA downstream 4814 13285337 ~ 13286312 (-) True G122942
TU154087 lncRNA downstream 143454 13141868 ~ 13147672 (-) True G122897
TU154067 lncRNA downstream 221888 13068834 ~ 13069238 (-) True G122879
TU154148 lncRNA upstream 502 13292321 ~ 13292568 (-) True G122948
TU154150 lncRNA upstream 1031 13292850 ~ 13293745 (-) True G122949
TU154151 lncRNA upstream 1931 13293750 ~ 13294149 (-) True G122950
TU154152 lncRNA upstream 3002 13294821 ~ 13295034 (-) True G122951
TU154154 lncRNA upstream 5085 13296904 ~ 13297354 (-) True G122953
AMCG00002405 mRNA downstream 41275 13238743 ~ 13249851 (-) True AMCG00002405
AMCG00002404 mRNA downstream 63982 13219608 ~ 13227144 (-) True AMCG00002404
AMCG00002403 mRNA downstream 77323 13196825 ~ 13213803 (-) True AMCG00002403
AMCG00002397 mRNA downstream 105089 13182721 ~ 13186037 (-) True AMCG00002397
AMCG00002396 mRNA downstream 111351 13152368 ~ 13179775 (-) True AMCG00002396
AMCG00002410 mRNA upstream 41176 13332995 ~ 13369397 (-) True AMCG00002410
AMCG00002411 mRNA upstream 85348 13377167 ~ 13384055 (-) True AMCG00002411
AMCG00002415 mRNA upstream 114533 13406352 ~ 13411130 (-) True AMCG00002415
AMCG00002416 mRNA upstream 122481 13414300 ~ 13430384 (-) True AMCG00002416
AMCG00002417 mRNA upstream 166664 13458483 ~ 13478876 (-) True AMCG00002417
TU154046 other downstream 261720 13028197 ~ 13029406 (-) False G122862
TU154047 other downstream 261720 13028197 ~ 13029406 (-) True G122862
TU153859 other downstream 1284775 11995828 ~ 12006351 (-) True AMCG00002368
TU153773 other downstream 1418264 11871862 ~ 11872862 (-) False AMCG00002351
TU153763 other downstream 1436235 11848470 ~ 11854891 (-) True AMCG00002350
TU154299 other upstream 357409 13649228 ~ 13654236 (-) False AMCG00002421
TU154543 other upstream 1649441 14941260 ~ 14946311 (-) True G123263
TU154950 other upstream 3544337 16836156 ~ 16839722 (-) True G123585
TU155250 other upstream 4630633 17922452 ~ 17989465 (-) True G123829
TU156333 other upstream 9794175 23085994 ~ 23153164 (-) True G124719

Expression Profile