RNA id: TU154150


Basic Information

Item Value
RNA id TU154150
length 779
lncRNA type inter_gene
GC content 0.61
exon number 2
gene id G122949
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 13292850 ~ 13293745 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aGAGGGGGATGTTATATTAATACTGGGAGTGACATTGCCacctacagagagagacaatgaaagaaaaagggagagaaagacagggagGGGGTGCTGTACCTGGAAGCGGGCCCGGCAGTGTGCTCGGTCCTTGTCCCGGCGCTGTGCGGTGCTCATTAGCGCGTCGAAGCACGAGTTCCAGAAGTTAGACATGAGATCATGACTCTTCCCAAACTTGTCCTCTTCATACTGCTGCATGGTGGGCTGcacctggacacacacacagtcacagtgtcacacagagtcacacagagtcacacacacaggagatCAGGATAAGGAGAGCAGTTACTGACGTGGTGTGAGAGGAAGTCCTGCCACTCCTGGGTGCCACAGTAGCTGTGCAGGTCCTGTGCGAAGGTGGCGCTGCCGTTGGTGGGGGGCAGGCCGGGCAGCAGGGCGCGCAGGCCAGGGGGGTCGGCGTGCTGATCCAAGAGGGTGCGCACGATGGGCACAAGCTGTGAGAAGGCCTCTGTCCGCCCCCCCACTTCCAGAGCCTTGGCCAAGGGGGTCCCCAGACGGCCTAGCAGGAAGCACACCTCCTCCCAGTCCAGGGACAGCACCGTCTGCAGCAGGCTGTGCAGCTTCACGCAGGCCGTggcacacCCTGAGAGTGCTGCTGCTGGATGTACCCTGCGATGATGCGCAGGCCGATCTGAGCCATCTCCCTGAGCTCGGGGGGGCTGGGGGAGCCGTGCCATGCCTGCAGCCGGTCCAGCAGGTTCACCACCCCCTCGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154148 lncRNA downstream 282 13292321 ~ 13292568 (-) True G122948
TU154147 lncRNA downstream 1031 13291126 ~ 13291819 (-) True G122947
TU154146 lncRNA downstream 2934 13289308 ~ 13289916 (-) True G122946
TU154145 lncRNA downstream 3601 13289041 ~ 13289249 (-) True G122945
TU154142 lncRNA downstream 6538 13285337 ~ 13286312 (-) True G122942
TU154151 lncRNA upstream 5 13293750 ~ 13294149 (-) True G122950
TU154152 lncRNA upstream 1076 13294821 ~ 13295034 (-) True G122951
TU154154 lncRNA upstream 3159 13296904 ~ 13297354 (-) True G122953
TU154155 lncRNA upstream 3687 13297432 ~ 13298674 (-) True G122954
TU154156 lncRNA upstream 5778 13299523 ~ 13300118 (-) True G122955
AMCG00002405 mRNA downstream 42999 13238743 ~ 13249851 (-) True AMCG00002405
AMCG00002404 mRNA downstream 65706 13219608 ~ 13227144 (-) True AMCG00002404
AMCG00002403 mRNA downstream 79047 13196825 ~ 13213803 (-) True AMCG00002403
AMCG00002397 mRNA downstream 106813 13182721 ~ 13186037 (-) True AMCG00002397
AMCG00002396 mRNA downstream 113075 13152368 ~ 13179775 (-) True AMCG00002396
AMCG00002410 mRNA upstream 39250 13332995 ~ 13369397 (-) True AMCG00002410
AMCG00002411 mRNA upstream 83422 13377167 ~ 13384055 (-) True AMCG00002411
AMCG00002415 mRNA upstream 112607 13406352 ~ 13411130 (-) True AMCG00002415
AMCG00002416 mRNA upstream 120555 13414300 ~ 13430384 (-) True AMCG00002416
AMCG00002417 mRNA upstream 164738 13458483 ~ 13478876 (-) True AMCG00002417
TU154046 other downstream 263444 13028197 ~ 13029406 (-) False G122862
TU154047 other downstream 263444 13028197 ~ 13029406 (-) True G122862
TU153859 other downstream 1286499 11995828 ~ 12006351 (-) True AMCG00002368
TU153773 other downstream 1419988 11871862 ~ 11872862 (-) False AMCG00002351
TU153763 other downstream 1437959 11848470 ~ 11854891 (-) True AMCG00002350
TU154299 other upstream 355483 13649228 ~ 13654236 (-) False AMCG00002421
TU154543 other upstream 1647515 14941260 ~ 14946311 (-) True G123263
TU154950 other upstream 3542411 16836156 ~ 16839722 (-) True G123585
TU155250 other upstream 4628707 17922452 ~ 17989465 (-) True G123829
TU156333 other upstream 9792249 23085994 ~ 23153164 (-) True G124719

Expression Profile