RNA id: TU154155


Basic Information

Item Value
RNA id TU154155
length 1243
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G122954
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 13297432 ~ 13298674 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTCATAGGTGCAGTAGTAGAAGACGTTGAGGGCCTCCACGGCCTCGGGGCCCCTCTGCTTGTAGCCAAAGATCAGGTCGATCCACTCGTGCAGGTGAGTGGACACGTGCTCCGACTCCTGCACACACATAAAGCAGGGACAGACACTACATGGGCTGTACACAGCAGGAGCATGCAACATGTAACATACACTACCACTGCAGTTGTTCAtacaaagacaataaataatgaaagcaaGGTGCTGGGGCCAATTGCATACATAAACAGATAAAAGTATAAGTTTGGTTCGTTCTGTCATGGCATCAGCGAGCCACACATTGGCGCCAGTTACCAGAGCTCTGCGGTGCTTCCTGATGAAGTCCTCCCGAGATTTGGCCCATCGCGGCAGCAGCACGTCACTCACGCTGTCCTGAGACATCTGCAGGCATCCCAGGTCAAACCCTGAGAAAGGGGATGACCGGAGGATAGGAGAGGAGGGCACAGtggggatgagagagagaaaaagagcgcgggagaaggaaggaaggaaaacgAGAGGCAAaaagggagaggcagggagagaggaacagGACGAGAGAAACAGAGTGAGGGTGAGGAGgaagtggacagagagcagagaaaATAAGGAGAGGCtcaaaagaaagagggagagggagagaggtagaAAGCGAGagtgaggagagggagagagagatggaaaaacaatgaatacTCAGAACAGGATTTACGCACACATCAGAAGACTCTCCTCTGCTGCCCAGAGTTCCTGTTCCTTTGCTTTACCCCCCAGTCCCTCCTCACCATTCATGTTCTCCAGGAACTCTGGGAAGTAGAAGAACTCTGGGATTAACTCTTTCACATCTGCAGGGCTCTCCATCCGGGCCTGCCAGGCTGCAGCAACAGAGTGGAACTGCCTGTCCGCACAGTCGAACCTGTAAACAGCACACAGTCAGTACAGTGACGCCTGCACacagtcaatcagtgtgtcagtgtgagtgttgGTGTGCCAGTGTGGGCAATTCCCTACCTGCCACTCTGTAGCTGTATGTGCAAGGTGGTGAAGGGCTCAGTCCTGATCATATAGTGCATGACTCCGGCTGCATTGGAGTAGTGTGTGCCGTAGTGGAACTTGTCGATAGTGCCAGTGGAGTCCTCGAAACTCTCATACCTGCAGAGgacacattacattacacagaCATACTGGATATGCAGTCAATGTCTGTGCACACTTAACATGTTCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154154 lncRNA downstream 78 13296904 ~ 13297354 (-) True G122953
TU154152 lncRNA downstream 2398 13294821 ~ 13295034 (-) True G122951
TU154151 lncRNA downstream 3283 13293750 ~ 13294149 (-) True G122950
TU154150 lncRNA downstream 3687 13292850 ~ 13293745 (-) True G122949
TU154148 lncRNA downstream 4864 13292321 ~ 13292568 (-) True G122948
TU154156 lncRNA upstream 849 13299523 ~ 13300118 (-) True G122955
TU154157 lncRNA upstream 3446 13302120 ~ 13303082 (-) True G122956
TU154158 lncRNA upstream 4478 13303152 ~ 13305595 (-) True G122957
TU154199 lncRNA upstream 112825 13411499 ~ 13412296 (-) True G122991
TU154235 lncRNA upstream 156411 13455085 ~ 13457059 (-) True G123014
AMCG00002405 mRNA downstream 47581 13238743 ~ 13249851 (-) True AMCG00002405
AMCG00002404 mRNA downstream 70288 13219608 ~ 13227144 (-) True AMCG00002404
AMCG00002403 mRNA downstream 83629 13196825 ~ 13213803 (-) True AMCG00002403
AMCG00002397 mRNA downstream 111395 13182721 ~ 13186037 (-) True AMCG00002397
AMCG00002396 mRNA downstream 117657 13152368 ~ 13179775 (-) True AMCG00002396
AMCG00002410 mRNA upstream 34321 13332995 ~ 13369397 (-) True AMCG00002410
AMCG00002411 mRNA upstream 78493 13377167 ~ 13384055 (-) True AMCG00002411
AMCG00002415 mRNA upstream 107678 13406352 ~ 13411130 (-) True AMCG00002415
AMCG00002416 mRNA upstream 115626 13414300 ~ 13430384 (-) True AMCG00002416
AMCG00002417 mRNA upstream 159809 13458483 ~ 13478876 (-) True AMCG00002417
TU154046 other downstream 268026 13028197 ~ 13029406 (-) False G122862
TU154047 other downstream 268026 13028197 ~ 13029406 (-) True G122862
TU153859 other downstream 1291081 11995828 ~ 12006351 (-) True AMCG00002368
TU153773 other downstream 1424570 11871862 ~ 11872862 (-) False AMCG00002351
TU153763 other downstream 1442541 11848470 ~ 11854891 (-) True AMCG00002350
TU154299 other upstream 350554 13649228 ~ 13654236 (-) False AMCG00002421
TU154543 other upstream 1642586 14941260 ~ 14946311 (-) True G123263
TU154950 other upstream 3537482 16836156 ~ 16839722 (-) True G123585
TU155250 other upstream 4623778 17922452 ~ 17989465 (-) True G123829
TU156333 other upstream 9787320 23085994 ~ 23153164 (-) True G124719

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00062288 True 7085 mRNA 0.55 42 NC_007117.7 4299164 ~ 4365331 (+)