RNA id: TU154156


Basic Information

Item Value
RNA id TU154156
length 596
lncRNA type inter_gene
GC content 0.59
exon number 1
gene id G122955
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 13299523 ~ 13300118 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGATGTGTCGGCAGATGCGTCCGACCAGTTTGCCCTTGTTGAGCGCAGTGACCCGCAGGCTGCAGTCCCAATGCCCCCCGCTGAACAGCAGCCTCCCGTCACTGGACACCACCAGCACCCGTGGGCCCAGCTCCGCCCCTGGGGACAGGGGGCCACACACCATCCGCTGGGTCCTgcagcaggagaaagaagggagagagaggggatgtgTGAGAGGGTGGATGCAGGGTGTGCGGAATGATTGAGAAATGGCAATGGGGGGAGTCTACTGTGacaggaggagggagagagaggcgcAGTGCAGGCGGGGTGGAGGGGGTCGTTGGTCTGCGGTCTCACTTGGGGTTGGAGATGGTAGGGTCCTTGGTGAAGGTGAAGTAGTTGGCGATGTTCTTGTCGTATGGCAGCCAGCTGTGTGTGCCCAGAAGGCCATTGGCACTGACTGTcacctgggggagagagggCAGGGGCACTTTATATTATTAGCTCATTGGGGTATCAGTGTGGAAAAgtgtatataagtgtgtgtgagactcACCAGCAGGTCTGATCCCTGTGTGATGAAGGAGCGCGTCTGGTTTCGGGGAACCACAGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154155 lncRNA downstream 849 13297432 ~ 13298674 (-) True G122954
TU154154 lncRNA downstream 2169 13296904 ~ 13297354 (-) True G122953
TU154152 lncRNA downstream 4489 13294821 ~ 13295034 (-) True G122951
TU154151 lncRNA downstream 5374 13293750 ~ 13294149 (-) True G122950
TU154150 lncRNA downstream 5778 13292850 ~ 13293745 (-) True G122949
TU154157 lncRNA upstream 2002 13302120 ~ 13303082 (-) True G122956
TU154158 lncRNA upstream 3034 13303152 ~ 13305595 (-) True G122957
TU154199 lncRNA upstream 111381 13411499 ~ 13412296 (-) True G122991
TU154235 lncRNA upstream 154967 13455085 ~ 13457059 (-) True G123014
TU154255 lncRNA upstream 186996 13487114 ~ 13491617 (-) True G123027
AMCG00002405 mRNA downstream 49672 13238743 ~ 13249851 (-) True AMCG00002405
AMCG00002404 mRNA downstream 72379 13219608 ~ 13227144 (-) True AMCG00002404
AMCG00002403 mRNA downstream 85720 13196825 ~ 13213803 (-) True AMCG00002403
AMCG00002397 mRNA downstream 113486 13182721 ~ 13186037 (-) True AMCG00002397
AMCG00002396 mRNA downstream 119748 13152368 ~ 13179775 (-) True AMCG00002396
AMCG00002410 mRNA upstream 32877 13332995 ~ 13369397 (-) True AMCG00002410
AMCG00002411 mRNA upstream 77049 13377167 ~ 13384055 (-) True AMCG00002411
AMCG00002415 mRNA upstream 106234 13406352 ~ 13411130 (-) True AMCG00002415
AMCG00002416 mRNA upstream 114182 13414300 ~ 13430384 (-) True AMCG00002416
AMCG00002417 mRNA upstream 158365 13458483 ~ 13478876 (-) True AMCG00002417
TU154046 other downstream 270117 13028197 ~ 13029406 (-) False G122862
TU154047 other downstream 270117 13028197 ~ 13029406 (-) True G122862
TU153859 other downstream 1293172 11995828 ~ 12006351 (-) True AMCG00002368
TU153773 other downstream 1426661 11871862 ~ 11872862 (-) False AMCG00002351
TU153763 other downstream 1444632 11848470 ~ 11854891 (-) True AMCG00002350
TU154299 other upstream 349110 13649228 ~ 13654236 (-) False AMCG00002421
TU154543 other upstream 1641142 14941260 ~ 14946311 (-) True G123263
TU154950 other upstream 3536038 16836156 ~ 16839722 (-) True G123585
TU155250 other upstream 4622334 17922452 ~ 17989465 (-) True G123829
TU156333 other upstream 9785876 23085994 ~ 23153164 (-) True G124719

Expression Profile