RNA id: TU154157


Basic Information

Item Value
RNA id TU154157
length 963
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G122956
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 13302120 ~ 13303082 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCGGCTGGCTTTCCTGCCCCCACCACAATCAGCTTGCCGTCCTCCAGGCCCACCAGGATGTGGCTGCTCTCCTTGGTCACTGAGACACTGCGTATCGGGAGCTTCAGGGCCAGAGGGGACACAATTGGCTGcaagctgcacacacacacacacacacacatgcacagacagagagaaatacACCCAGACACATGGTTAGAAAAGACATCATAGCTCAgagtgtaacagtgtgtgtgagagtgctaCAGAGTGAGGGAGTCAGAATGACACACAACTGTTTAACTGTGAGTGTCACTCTTGTTATGCCGCTATCAGTTACTTTCACATGTCTAATCTGTctttaattgtgtgtttcttaGCACTTCAGGCAAAAAGACAACTGATTTCATCCTACTGAATGAAGAGTGAGGGAACCACGAAATGCCTGCCTCCCAGCGTGTGGCCTATGGGTCGCAGCCCCCCGACGCTACTCACCTGTGCAGGTCTCTGATGTGCAGGTTGCCCTGTGCGGTGCCCAGGATTGTGAAGTCTTGCACCATGTACAGCGCTGTCACATGCTCCTCCAGAGACACAGACGCCAACCTCTTCCCATTGATGGAGTACAGATGGAGAGCGTACTtatcctggagagagagagggcgagacAGAGAGATATTAAACATAACCCTTAGTATTCATGACCATATATGTCATGCACAGCAGCCTGGTATATGGGAATAATATATTGTTGTCAGTTCTATTAAATGTacgttatatatgtatacacatcaCACTGTGCTGTGTAGTTCTGCTGTTGTGGTACCTTGCGTGTGCCCTGACCCTCAACAACAGTCTGGGTGAGGATGTAGCCCTCCATGCCTACTGCCAGCTCCGTCACGCTGCCCCCCAGACAGCCCTCGCACGGCGGACGCAGGCTGCGCAGAAACTGCCCGCGTCGGATACTGTGCACTATCACTGTGCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154156 lncRNA downstream 2002 13299523 ~ 13300118 (-) True G122955
TU154155 lncRNA downstream 3446 13297432 ~ 13298674 (-) True G122954
TU154154 lncRNA downstream 4766 13296904 ~ 13297354 (-) True G122953
TU154152 lncRNA downstream 7086 13294821 ~ 13295034 (-) True G122951
TU154151 lncRNA downstream 7971 13293750 ~ 13294149 (-) True G122950
TU154158 lncRNA upstream 70 13303152 ~ 13305595 (-) True G122957
TU154199 lncRNA upstream 108417 13411499 ~ 13412296 (-) True G122991
TU154235 lncRNA upstream 152003 13455085 ~ 13457059 (-) True G123014
TU154255 lncRNA upstream 184032 13487114 ~ 13491617 (-) True G123027
TU154403 lncRNA upstream 775162 14078244 ~ 14111201 (-) True G123152
AMCG00002405 mRNA downstream 52269 13238743 ~ 13249851 (-) True AMCG00002405
AMCG00002404 mRNA downstream 74976 13219608 ~ 13227144 (-) True AMCG00002404
AMCG00002403 mRNA downstream 88317 13196825 ~ 13213803 (-) True AMCG00002403
AMCG00002397 mRNA downstream 116083 13182721 ~ 13186037 (-) True AMCG00002397
AMCG00002396 mRNA downstream 122345 13152368 ~ 13179775 (-) True AMCG00002396
AMCG00002410 mRNA upstream 29913 13332995 ~ 13369397 (-) True AMCG00002410
AMCG00002411 mRNA upstream 74085 13377167 ~ 13384055 (-) True AMCG00002411
AMCG00002415 mRNA upstream 103270 13406352 ~ 13411130 (-) True AMCG00002415
AMCG00002416 mRNA upstream 111218 13414300 ~ 13430384 (-) True AMCG00002416
AMCG00002417 mRNA upstream 155401 13458483 ~ 13478876 (-) True AMCG00002417
TU154046 other downstream 272714 13028197 ~ 13029406 (-) False G122862
TU154047 other downstream 272714 13028197 ~ 13029406 (-) True G122862
TU153859 other downstream 1295769 11995828 ~ 12006351 (-) True AMCG00002368
TU153773 other downstream 1429258 11871862 ~ 11872862 (-) False AMCG00002351
TU153763 other downstream 1447229 11848470 ~ 11854891 (-) True AMCG00002350
TU154299 other upstream 346146 13649228 ~ 13654236 (-) False AMCG00002421
TU154543 other upstream 1638178 14941260 ~ 14946311 (-) True G123263
TU154950 other upstream 3533074 16836156 ~ 16839722 (-) True G123585
TU155250 other upstream 4619370 17922452 ~ 17989465 (-) True G123829
TU156333 other upstream 9782912 23085994 ~ 23153164 (-) True G124719

Expression Profile