RNA id: TU154158


Basic Information

Item Value
RNA id TU154158
length 2420
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G122957
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 13303152 ~ 13305595 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttgtagaaaatattttatttttctgtattttcagtgtCTTTTATGAAGTACAATAACAAACGCCATGACAGCAGTCGAACAAGACAGTCTTCCCCTTTGAAGGCTTTGCCACCTGAGCATAAGGcttgtcaatttttttttttttcttttttcacacagtTGTGCTCTGGGCAAACACGTTGTTGCGCAGGCCATTGCAGATACAGTATAtttagacacacatacacagagacagacacatatacacagacacacacagcagtggcAGCCTGGAAATGCATGTTGCTGTCGTGCTGCTCAAGGAAACCAGAGAAAAAAATTCTTCAGCCTGCCAGGGACCAGGCCAAGATTATTGCACAGCTCCATCCAAACTGGCTCGTGTAACTAAGTGCAGAAATGTGTGCAGCTGCAGCGCGTGCCTCAGAGCGCTGTGTGTAACAAAGCTGCAGATGCAGAGTTCCTTactggacagagagacagagagagacagagactcaGGAGTTCAGACAAGGTCTTTGTGTCCAGAGACCGTCCCATGTCAGACAAtcgcacacaacacacagccgGCCTGATGCAGCCATCTGACAAAGAGCTCCGGAGAAAACCAAGCCCCTAATTAAAACCTGACGGCTCTGTGCATTCCCAGCTGCTGTCGTTTATAGACATTCAGTGCTCAAGTACAAAGTGGGAGAagaaatcatcatcattacCAGAATAATAATCgttacaacaacagcaaaaacaacatattggtcattttttaaataaaaacgacaaaagaaaaacaaaacacacactacaAAACAGTAACAGTAGAGGGAACAAATTTGAACACACAGTAGGTTGTGCTGACTCCCACTGACGCCCCTGACTCCCGTCCCCCCCAGGCCCACTCCACCAGTCCTAGCCCGACAGTGACCCTCGCTGGCAGACGGGATTATTGCAGTGTCACACAGAGCCCTGATGCGCTCTCGGCTCCTCTCTGTGGTGGGTCtctcccgccccccccccccccccccactgcggCCGGCCGGAGCTCCGTGCTGTGGTGGGTCGGTGTAAACAGGgagaacacacagacactcacacggCACAGAGTCCCATTGTGCCTCAGGGCTGACCTTGGTTCACACTGGAAAGTACAAACCCCCTGCCTCTCACAGTGAAGTCGCTCGGACTCGTCCCTCGGATAACTGCTTCAGTTGTGGCCGTGACactccacaaacacaaaaacacaatgcacagCTGCTCCCTGCAAGGCCTGTCTCTGGTGGGGGAAACCCTCTGAGGCTCAGCTCCACTGCCAGGTTCCTTGTTCTCACCCTGCAGACTGGCTGTACCTCAAGAGAAGTGTGGGCAGTCTGGCAGAGCTGGTTGAGTGAGCCCAGTGCTGGCACTGAACATGGAGACAGGGTGGCACCTGCTGGCAACACAGAGGATCTACAGGGGTGTAGGCCAGTGGAGCTGCTGTCATTGATATAAAGTGCGAGCCACTGTTCAGCCCTTGAGCTCTATATTGAAGCAGGGAACTGAGGTGCTCAGATGGGGCAGACTGGACAGGGTGGCTGGGGGGCATGGAGGCAGGAGGGCAGGGCATAGCAGGATAGAAACTGTGTGTCCCTCCGTGGGCATAGCTGGAGGCCCCTCCTGTACATGTCCAACCCAACCCCgaaccagcacacacacaatcacacacacatacacacacatacacacagctaCACCGAGCTGCAAAGTCAGCAGTACCCTGGAGGTATAATACACAGTGATCTTTAAAATGGAACCAGTATCTTTggttgaaaataaaagaaataaataaaacaaaacatgttttttctttttgtccttTTCCTTGGAAAAGAGTGCAACTGTAGGAAAATCCATCAGACTCCCTTCTCTCTGGGTCTCCCTGCCCCCTGGAGAAGCACTGGAGAGAGACGGATGGAGTTTGGTTGGGAACAGAGAGGGGCCCTGTAAAGTCACAGTGGAAGAGAGGAAGgtcgggagagagagaggacaggagggGAGTGGAGAAGAATGGGTCCTACAATCCTTGTCCATGTCCTTTCAAGGTTCGTGTTCTTTTCCTCTACTCCAGAGGCCTGTCTGTATTCCCAGCCCCGTGCCCTGTCCCCCACCTTCCCAACCAATGGCAGGTGCAGCCCGGCCTCTATTTCCTAGCAGTGTCAGGGGGGTTGTACTCTGTCTCGCCTGAGGACACCTGAGAGATCCTGCGGGTGGAGCCCCACAGCCGGCGAGTTAGGGCCCCTGATCGcacctgagagggagagagggaggaggaagagagtgggagagggggagagagataaagagattAGCTCCCCAGGTATAGCAAGTCCAGAGCCTGTCTTTCGATCAAACCAACACACACCATGTGACCCTTTCCTCACTGCTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154157 lncRNA downstream 70 13302120 ~ 13303082 (-) True G122956
TU154156 lncRNA downstream 3034 13299523 ~ 13300118 (-) True G122955
TU154155 lncRNA downstream 4478 13297432 ~ 13298674 (-) True G122954
TU154154 lncRNA downstream 5798 13296904 ~ 13297354 (-) True G122953
TU154152 lncRNA downstream 8118 13294821 ~ 13295034 (-) True G122951
TU154199 lncRNA upstream 105904 13411499 ~ 13412296 (-) True G122991
TU154235 lncRNA upstream 149490 13455085 ~ 13457059 (-) True G123014
TU154255 lncRNA upstream 181519 13487114 ~ 13491617 (-) True G123027
TU154403 lncRNA upstream 772649 14078244 ~ 14111201 (-) True G123152
TU154433 lncRNA upstream 1237226 14542821 ~ 14543020 (-) True G123175
AMCG00002405 mRNA downstream 53301 13238743 ~ 13249851 (-) True AMCG00002405
AMCG00002404 mRNA downstream 76008 13219608 ~ 13227144 (-) True AMCG00002404
AMCG00002403 mRNA downstream 89349 13196825 ~ 13213803 (-) True AMCG00002403
AMCG00002397 mRNA downstream 117115 13182721 ~ 13186037 (-) True AMCG00002397
AMCG00002396 mRNA downstream 123377 13152368 ~ 13179775 (-) True AMCG00002396
AMCG00002410 mRNA upstream 27400 13332995 ~ 13369397 (-) True AMCG00002410
AMCG00002411 mRNA upstream 71572 13377167 ~ 13384055 (-) True AMCG00002411
AMCG00002415 mRNA upstream 100757 13406352 ~ 13411130 (-) True AMCG00002415
AMCG00002416 mRNA upstream 108705 13414300 ~ 13430384 (-) True AMCG00002416
AMCG00002417 mRNA upstream 152888 13458483 ~ 13478876 (-) True AMCG00002417
TU154046 other downstream 273746 13028197 ~ 13029406 (-) False G122862
TU154047 other downstream 273746 13028197 ~ 13029406 (-) True G122862
TU153859 other downstream 1296801 11995828 ~ 12006351 (-) True AMCG00002368
TU153773 other downstream 1430290 11871862 ~ 11872862 (-) False AMCG00002351
TU153763 other downstream 1448261 11848470 ~ 11854891 (-) True AMCG00002350
TU154299 other upstream 343633 13649228 ~ 13654236 (-) False AMCG00002421
TU154543 other upstream 1635665 14941260 ~ 14946311 (-) True G123263
TU154950 other upstream 3530561 16836156 ~ 16839722 (-) True G123585
TU155250 other upstream 4616857 17922452 ~ 17989465 (-) True G123829
TU156333 other upstream 9780399 23085994 ~ 23153164 (-) True G124719

Expression Profile