RNA id: TU154403


Basic Information

Item Value
RNA id TU154403
length 447
lncRNA type sense_over
GC content 0.46
exon number 2
gene id G123152
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 14078244 ~ 14111201 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCCTTTTAGTTTCCACGGCATGGATTGGGGGAGGGGCGATCGGGACACATAGGGCATAGTGAAATAAGGCCAGGGAAATGAAAAGGGGCAGTGGCGCGCAccacccctgccccccacctcTGCCTGTGGCTGTATATCCAAGACCTCCTGTGCAGCTGTCCACCAGCACGTAACCTACACTCTTTTAAATTGGACCTTCTCCAAGTCCCCAGGACAAAGCATTGCACTTTAGGGGACTGGGCCTTCTCTGTAGTAGCACCTCATCTATGGAACTCACTCCCTGGCTATATCAAAGTCTGTAACACCcttgacattttttaatctaatcttataacacatttttatgaattggcctatgtaaaaaaaatattgttgatgtgttttgtatgtgttttattgtggttTATACTGTGAAGTGCCCTGAGATTCCTGTAATTAATTgcgct

Function

GO:

id name namespace
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0090504 epiboly biological_process
GO:0001702 gastrulation with mouth forming second biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154255 lncRNA downstream 586627 13487114 ~ 13491617 (-) True G123027
TU154235 lncRNA downstream 621185 13455085 ~ 13457059 (-) True G123014
TU154199 lncRNA downstream 665948 13411499 ~ 13412296 (-) True G122991
TU154158 lncRNA downstream 772649 13303152 ~ 13305595 (-) True G122957
TU154157 lncRNA downstream 775162 13302120 ~ 13303082 (-) True G122956
TU154433 lncRNA upstream 431620 14542821 ~ 14543020 (-) True G123175
TU154435 lncRNA upstream 455046 14566247 ~ 14567067 (-) True G123177
TU154436 lncRNA upstream 476013 14587214 ~ 14588758 (-) True G123178
TU154437 lncRNA upstream 477608 14588809 ~ 14594542 (-) True G123179
TU154473 lncRNA upstream 580769 14691970 ~ 14692999 (-) True G123204
AMCG00002434 mRNA downstream 34340 13990906 ~ 14043904 (-) True AMCG00002434
AMCG00002433 mRNA downstream 111777 13966110 ~ 13966467 (-) True AMCG00002433
AMCG00002432 mRNA downstream 138983 13885177 ~ 13939261 (-) True AMCG00002432
AMCG00002430 mRNA downstream 285054 13788543 ~ 13793190 (-) True AMCG00002430
AMCG00002431 mRNA downstream 305935 13768415 ~ 13772309 (-) True AMCG00002431
AMCG00002435 mRNA upstream 16603 14127804 ~ 14151845 (-) True AMCG00002435
AMCG00002438 mRNA upstream 253854 14365055 ~ 14369820 (-) True AMCG00002438
AMCG00002445 mRNA upstream 569183 14680384 ~ 14682429 (-) True AMCG00002445
AMCG00002448 mRNA upstream 585197 14696398 ~ 14731127 (-) True AMCG00002448
AMCG00002447 mRNA upstream 650636 14761837 ~ 14787948 (-) True AMCG00002447
TU154299 other downstream 424008 13649228 ~ 13654236 (-) False AMCG00002421
TU154046 other downstream 1048838 13028197 ~ 13029406 (-) False G122862
TU154047 other downstream 1048838 13028197 ~ 13029406 (-) True G122862
TU153859 other downstream 2071893 11995828 ~ 12006351 (-) True AMCG00002368
TU153773 other downstream 2205382 11871862 ~ 11872862 (-) False AMCG00002351
TU154543 other upstream 830059 14941260 ~ 14946311 (-) True G123263
TU154950 other upstream 2724955 16836156 ~ 16839722 (-) True G123585
TU155250 other upstream 3811251 17922452 ~ 17989465 (-) True G123829
TU156333 other upstream 8974793 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 9070720 23181921 ~ 23185168 (-) True AMCG00002629

Expression Profile