RNA id: TU154427



Basic Information


Item Value
RNA id TU154427
length 1092
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G123169
representative True

Chromosome Information


Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 14365036 ~ 14366335 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TTtctttttataacattttattgctTCACATTGAAATTAATCTTGTTTTGTCCTCGTTTGTCTGCCATAGCGCAATAATTACTGACTAAAAGATGAAGACAGGGAAGTATGAAAATCTAATTGTAGTTTATAAGGTGGGTAATAATTGTGGCATACTTGCTAAAAATAACCTTTAATGGCAATGcactttgaataaaaataatcatcaggACAGGATTCAGAGAAGCAATCGGTCACGTAGAAACTGACTTGTTATATAAACAATTATACTATATTCACAAAATCATATCTTCTCAGCTAAACTTCCTCAAAAAGCATTTATCAGGACAAAATACTTGAAAATAGTCAAACATCTtcacaaaaaactgttttaatgtcATATTGACAGGAGTCTTCTACACATGATGAATGGATAAACCGGGTTTTAAGGAACGTTAGGAAAAGCACGGCCTACTAACAGTCACTCGTAGAAAATACAAGGTATGTATGATGACGGTTTTATTCCACACTTGTCTGCATCTCGGAGAATCGGCTGAAATGGCGATAAAGGGCAGCGCCGGCCCTCTGCGCTGTCACTCTGCGGTTGCTTTTCACAGAGTGGCGATGGGGACTCGGCCTGGTGAGCACCGATCGCTACACAAGAGCCCCTTTTGCTCTCCAGTCCCCTGACAACAGGTCCATGagttcctcctcctcttcctcgctgTTCATCTCCTCGGTGCTGTGCTCCGGCTCCGTATCCATCTTCCTCCTCAGCTCCTCCTTTATGATGTCCTGTTTGTCTCTCAGCTGCTCAACTCGCCGGTAGCACTCTCTGAAAATCCGGAACGCAAGACATTGGATGGCAGGACCATGTGAAGgCCCTACAATGTGCCGTTTACTCACATTTGCTCATCAATCTCCCCAATTTGCCGGTCTAAGCGCCCCTCCTCGTCGTCCTCTGCTACGATGGCTTCTGAAGCctaaagagaagaaacaaaaaacatgggATGCATTTCATTCACAAGCATCAATTTAATATCCAGAAAGCACAACAAAGTGCCTACAAACGTTCACCATTACATGCTATAACATCACCGAGGCATGTGACAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU154415 lncRNA upstream 3500 14353397 ~ 14361536 (+) False AMCG00002437
TU154277 lncRNA upstream 774355 13572519 ~ 13590681 (+) True G123043
TU154275 lncRNA upstream 794225 13566414 ~ 13570811 (+) True G123041
TU154271 lncRNA upstream 818736 13546064 ~ 13546300 (+) True G123039
TU154127 lncRNA upstream 1059437 13304697 ~ 13305599 (+) True G122929
TU154429 lncRNA downstream 2758 14369093 ~ 14369913 (+) True G123171
TU154466 lncRNA downstream 325646 14691981 ~ 14692776 (+) True G123197
TU154580 lncRNA downstream 896614 15262949 ~ 15340169 (+) False G123295
TU154579 lncRNA downstream 971253 15337588 ~ 15340169 (+) True G123295
TU154711 lncRNA downstream 1323266 15689601 ~ 15689963 (+) True G123386
AMCG00002437 mRNA upstream 4858 14327632 ~ 14360178 (+) True AMCG00002437
AMCG00002429 mRNA upstream 487239 13867114 ~ 13877797 (+) True AMCG00002429
AMCG00002424 mRNA upstream 646575 13700250 ~ 13718461 (+) True AMCG00002424
AMCG00002423 mRNA upstream 668434 13691020 ~ 13696602 (+) True AMCG00002423
AMCG00002422 mRNA upstream 708478 13655239 ~ 13656558 (+) True AMCG00002422
AMCG00002440 mRNA downstream 32852 14399187 ~ 14459606 (+) True AMCG00002440
AMCG00002439 mRNA downstream 200064 14566399 ~ 14576984 (+) True AMCG00002439
AMCG00002442 mRNA downstream 239329 14605664 ~ 14614093 (+) True AMCG00002442
AMCG00002444 mRNA downstream 272541 14638876 ~ 14641950 (+) True AMCG00002444
AMCG00002441 mRNA downstream 289518 14655853 ~ 14666224 (+) True AMCG00002441
TU154081 other upstream 1235339 13125378 ~ 13129697 (+) True AMCG00002393
TU154058 other upstream 1303351 13058073 ~ 13061685 (+) False AMCG00002388
TU153909 other upstream 2224571 12133786 ~ 12140465 (+) True G122746
TU153704 other upstream 2528867 11835439 ~ 11836169 (+) True G122582
TU153608 other upstream 2670871 11688600 ~ 11694165 (+) True AMCG00002331
TU154987 other downstream 2591826 16958161 ~ 16960082 (+) True AMCG00002500
TU155222 other downstream 3549101 17915436 ~ 17984730 (+) True G123807
TU155458 other downstream 4465679 18832014 ~ 18838531 (+) True G123989
TU155541 other downstream 4764068 19130403 ~ 19132358 (+) False AMCG00002561
TU155679 other downstream 5907754 20274089 ~ 20276255 (+) True AMCG00002573

Expression Profile