RNA id: TU154435


Basic Information

Item Value
RNA id TU154435
length 821
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G123177
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 14566247 ~ 14567067 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCCTCCAGCGATTTGTAGGTCTTGCCTCTGAACTCACAGTAGTTTTTCCTCTCTTTGCACTGAGGACAGCACTGGCTGGTGTCCACGCGGATACAGCGGGGGTGTACTTTGGGGCACTCGGGTTTCGCACACAGTGGCCCTTCTTCGGTGCACAGGCAAGGACAGGTGGACGGACCCGGAGTGAACTTGTCCCCAATGGCAAACACAAAGCCGCTCTCATCCACACAGCCCTTCCCGCGATAGTCGGGGTAGGCGTACTCGTCCAGACCATCTGGGGTCACGCTGGACTCACTGGTGGGACCCTCGTCCATCTGCTCCAGGGACGTCtcatcctgctgctgctggacttTCTCTTCTTTGTTCCCGGTATCCTGATTAGTCCAGCCCGGCTTTGCTTTGCTGAAACTGGTCCGGTTTCCTTTGCCCTTGCCTTGTTTGACCACTTCCTCCCTCCCCATCCTGCCAATCTCCTCCAGCTGCTCCTGGCTGGCCTGGCTCAGCCCACTCTTGGAGGCTTGGTCCTGTTTGATCTGGGTCAATGCCCGTTCCAGCCTCTCTTGGCTCATCTGCAGGGGGATTGTGGGATTGCAGAGGATGCCCATCAGGTAGCAGGTGATGAGAAGGGCTCTAGATAGAAGGCCAATCGTCATGGCAAGAGAATGCCGCATGTCTCTCCACCACCCCCAGGGGTGAGGACGCTCACATCACAGATTCACATCACTGTCACCATCTCCCCGCACGCATctgcaaaataacaacaaaaatttCAAATCATGTATGGTTATTTTATATGGAGCAGCTggcaaatattaatattttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154433 lncRNA downstream 23227 14542821 ~ 14543020 (-) True G123175
TU154403 lncRNA downstream 455046 14078244 ~ 14111201 (-) True G123152
TU154255 lncRNA downstream 1074630 13487114 ~ 13491617 (-) True G123027
TU154235 lncRNA downstream 1109188 13455085 ~ 13457059 (-) True G123014
TU154199 lncRNA downstream 1153951 13411499 ~ 13412296 (-) True G122991
TU154436 lncRNA upstream 20147 14587214 ~ 14588758 (-) True G123178
TU154437 lncRNA upstream 21742 14588809 ~ 14594542 (-) True G123179
TU154473 lncRNA upstream 124903 14691970 ~ 14692999 (-) True G123204
TU154664 lncRNA upstream 914077 15481144 ~ 15483716 (-) True G123346
TU154710 lncRNA upstream 1120388 15687455 ~ 15689341 (-) True G123385
AMCG00002438 mRNA downstream 196427 14365055 ~ 14369820 (-) True AMCG00002438
AMCG00002435 mRNA downstream 414402 14127804 ~ 14151845 (-) True AMCG00002435
AMCG00002436 mRNA downstream 464848 14070785 ~ 14101399 (-) True AMCG00002436
AMCG00002434 mRNA downstream 522343 13990906 ~ 14043904 (-) True AMCG00002434
AMCG00002433 mRNA downstream 599780 13966110 ~ 13966467 (-) True AMCG00002433
AMCG00002445 mRNA upstream 113317 14680384 ~ 14682429 (-) True AMCG00002445
AMCG00002448 mRNA upstream 129331 14696398 ~ 14731127 (-) True AMCG00002448
AMCG00002447 mRNA upstream 194770 14761837 ~ 14787948 (-) True AMCG00002447
AMCG00002446 mRNA upstream 228020 14795087 ~ 14849774 (-) True AMCG00002446
AMCG00002452 mRNA upstream 344388 14911455 ~ 14920505 (-) True AMCG00002452
TU154299 other downstream 912011 13649228 ~ 13654236 (-) False AMCG00002421
TU154046 other downstream 1536841 13028197 ~ 13029406 (-) False G122862
TU154047 other downstream 1536841 13028197 ~ 13029406 (-) True G122862
TU153859 other downstream 2559896 11995828 ~ 12006351 (-) True AMCG00002368
TU153773 other downstream 2693385 11871862 ~ 11872862 (-) False AMCG00002351
TU154543 other upstream 374193 14941260 ~ 14946311 (-) True G123263
TU154950 other upstream 2269089 16836156 ~ 16839722 (-) True G123585
TU155250 other upstream 3355385 17922452 ~ 17989465 (-) True G123829
TU156333 other upstream 8518927 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 8614854 23181921 ~ 23185168 (-) True AMCG00002629

Expression Profile