RNA id: TU154436


Basic Information

Item Value
RNA id TU154436
length 1545
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G123178
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 14587214 ~ 14588758 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTCATAGGAATTGCTAATGAGCCACTGCGCGACGCCTCTCAATACATCACTCTAGTGACACATGGAGCCATGTATTTCCCTCTCTTGTTTTCCCTCTCTACAGATCTCCTGTtacctgggccctggcagtgTGTTCACAGCCCTGATCGGATGATGAAGAGCTGCAGTTTGAGGCGAGTGCAATGAGAAGATGGGGATGCTAGCTATGCCTGCTGTGTacaactgaaatggaaaaagcCCCTCATACATCTGCAATAGTATGAAATACTACAATACATCACACGGTTTGACAAAATCGACATTCAGTGTGATTAATGCTGCTTTAAACCCTACTGCTGcccctatttaaaaaaaacctaaaaaacacattttttaccTATGCCTTTCTTTTCTGAGCACACCTCCTTTCAGAGCATGTCTAAGGCAGTATcaggttgatttattttaattcgaGGGTAATGGGTTCCACATCTCTTCAGATTCCATCCTTTCTTTCCCAGCAGCTTCAGCTGGCACTAATTCAAATACTACTGCCACACTATCAGGGAACCAAATCCCACTAAAATATCGAAACCAGCATCACCAGAACTAGGCTGGCCTTTccagaataaataatttgtcTTCAGTTGCAGATATGCAGATATTTAGAGTATAGGATAGTTGATGTGCCGTATCCCCATCGAATACAGGTTATGCACCAATACTAAACAACACATGAAAGCAGACAAATCTCAGAAGAGGGGGATCCCTCTGTGGGACGGGTGGCTGAAAATGAATGTACCACTGAATAAAATGCTaaaccaaacaataaaaagataACTCACAATTgcactttatttcaaatgaaattcaaatatAAGCATCTTGGCAGGCCATTTTCTGAAGTGACCTGACAAAGTAGCATTTCCTCTCACTTAATTGCATCACCAATAGCAGGAGGCAGACCATTAACATAGTGCTCCTGTAAAGTTTCCTCAAACCTCTTCACTCTTTACATTCCCAAAAAAAGTGACTTAATGGCCCTGCCCCAGCTTCACAgtgtaaaaatattttcagttcCTTAAAAAAAGAGGTTTTGGTTTTACCCCATGTTGGCTAACAGTCTAAAAaccagaacaaaaaataaatacaaataaacaaacaaaacaccttaATGAGAATTACAAAAAGTCATAGAAAGTGTGTAGGAGATTACAATTTCCAAGAACCGTGTCTTTATATCACCTGACCGAGAACCTTGCCTTGTCTGTTTATCAGGCGCATGACATAAGAAAAACTGCATGACATAGaccataaaaaaattaaataaataaaaactctaCAGAGCATCTGAAATGGCTGGTCAGAACTTTTGCCAGTGGGAGGCCGAGCCCCCGCAATGTTTCCGTTTCTTGACATCACCTGGCTTTTAGCTTGGCTTGCATTCATTCTTGCTGCAGGTCGCCTGGCGTTCGATCCTCCACGTGCCTTCTTCATATGTGCAGTAGCAAATTGTGCACTCGTCAATTTTCACCTCCCGGCCAGCTGGTATCACAGCGTTGTCA

Function

GO:

id name namespace
GO:0031224 intrinsic component of membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
ko05033 Nicotine addiction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154435 lncRNA downstream 20147 14566247 ~ 14567067 (-) True G123177
TU154433 lncRNA downstream 44194 14542821 ~ 14543020 (-) True G123175
TU154403 lncRNA downstream 476013 14078244 ~ 14111201 (-) True G123152
TU154255 lncRNA downstream 1095597 13487114 ~ 13491617 (-) True G123027
TU154235 lncRNA downstream 1130155 13455085 ~ 13457059 (-) True G123014
TU154437 lncRNA upstream 51 14588809 ~ 14594542 (-) True G123179
TU154473 lncRNA upstream 103212 14691970 ~ 14692999 (-) True G123204
TU154664 lncRNA upstream 892386 15481144 ~ 15483716 (-) True G123346
TU154710 lncRNA upstream 1098697 15687455 ~ 15689341 (-) True G123385
TU154729 lncRNA upstream 1134175 15722933 ~ 15723137 (-) True G123401
AMCG00002438 mRNA downstream 217394 14365055 ~ 14369820 (-) True AMCG00002438
AMCG00002435 mRNA downstream 435369 14127804 ~ 14151845 (-) True AMCG00002435
AMCG00002436 mRNA downstream 485815 14070785 ~ 14101399 (-) True AMCG00002436
AMCG00002434 mRNA downstream 543310 13990906 ~ 14043904 (-) True AMCG00002434
AMCG00002433 mRNA downstream 620747 13966110 ~ 13966467 (-) True AMCG00002433
AMCG00002445 mRNA upstream 91626 14680384 ~ 14682429 (-) True AMCG00002445
AMCG00002448 mRNA upstream 107640 14696398 ~ 14731127 (-) True AMCG00002448
AMCG00002447 mRNA upstream 173079 14761837 ~ 14787948 (-) True AMCG00002447
AMCG00002446 mRNA upstream 206329 14795087 ~ 14849774 (-) True AMCG00002446
AMCG00002452 mRNA upstream 322697 14911455 ~ 14920505 (-) True AMCG00002452
TU154299 other downstream 932978 13649228 ~ 13654236 (-) False AMCG00002421
TU154046 other downstream 1557808 13028197 ~ 13029406 (-) False G122862
TU154047 other downstream 1557808 13028197 ~ 13029406 (-) True G122862
TU153859 other downstream 2580863 11995828 ~ 12006351 (-) True AMCG00002368
TU153773 other downstream 2714352 11871862 ~ 11872862 (-) False AMCG00002351
TU154543 other upstream 352502 14941260 ~ 14946311 (-) True G123263
TU154950 other upstream 2247398 16836156 ~ 16839722 (-) True G123585
TU155250 other upstream 3333694 17922452 ~ 17989465 (-) True G123829
TU156333 other upstream 8497236 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 8593163 23181921 ~ 23185168 (-) True AMCG00002629

Expression Profile