RNA id: TU154466



Basic Information


Item Value
RNA id TU154466
length 796
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G123197
representative True

Chromosome Information


Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 14691981 ~ 14692776 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


aatcagcaggggatcaaatacttttttccctcactgtactacTCTGTATGTAATGCATAACTTACCAAAGTGATCTGCGTATCTTGTAGTCTGCACAGCTCTCCTTCTGCGTGGGATTATTTTGTGTTCTCAGGGTCAGGACTCAATGAGAGCCTTGTGCCAAGCGTGGTTCAAATATCATGACTTCACTGTCACTGAAAGTAATGTGTTCTCCAATGTGTATGTACTGCCTTGAAAAGcagagtgtttttgtttatttcaattgtCATCTGTgcctatttttatttgattgtggaTTTCTGTGGCACTGAAGAGAAGATGATATACTTCTGAAACATGGGGACTCATTGAGGAGAGACAGCTACGTAGAATTGTTATCATTGGCATCTCATTTCCTGATGGTGCAAATGGTCGAGgctgattgtattgtattgcattggtTCAGCTTGAAGGAGAAATTAGATAGAGAATGTAGTATTTGAGTGTATCTAACCTGTGCTTCTGATACGGAAACTACACTTGAACCCGATTCCTCTGAAACTGCTGTTGACCCAGAATAAAGCTCAAATAAAAAGgatgaaataaaaactgatggAAACACAGTGATGTATCTCTGTATAAGGGCAGAGGAATGGACTTGGACCAAGAAGACAAATCACAGAATGAAGCCATGAAGGAACTTGAATGAGCTTTTACTGTTATTAGGTGGTTTTTCATGTGTTAGTTTTTGTGGTTTGGTGAGTGTTTATCCCTGTCTGTCATGAAGATTAAATCCAAATAAACACCCACAATCACA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU154429 lncRNA upstream 322068 14369093 ~ 14369913 (+) True G123171
TU154427 lncRNA upstream 325646 14365036 ~ 14366335 (+) True G123169
TU154415 lncRNA upstream 330445 14353397 ~ 14361536 (+) False AMCG00002437
TU154277 lncRNA upstream 1101300 13572519 ~ 13590681 (+) True G123043
TU154275 lncRNA upstream 1121170 13566414 ~ 13570811 (+) True G123041
TU154580 lncRNA downstream 570173 15262949 ~ 15340169 (+) False G123295
TU154579 lncRNA downstream 644812 15337588 ~ 15340169 (+) True G123295
TU154711 lncRNA downstream 996825 15689601 ~ 15689963 (+) True G123386
TU154713 lncRNA downstream 1101632 15794408 ~ 15795149 (+) True G123388
TU154813 lncRNA downstream 1793050 16485826 ~ 16489952 (+) True G123468
AMCG00002443 mRNA upstream 5011 14686068 ~ 14686970 (+) True AMCG00002443
AMCG00002441 mRNA upstream 25757 14655853 ~ 14666224 (+) True AMCG00002441
AMCG00002444 mRNA upstream 50031 14638876 ~ 14641950 (+) True AMCG00002444
AMCG00002442 mRNA upstream 77888 14605664 ~ 14614093 (+) True AMCG00002442
AMCG00002439 mRNA upstream 114997 14566399 ~ 14576984 (+) True AMCG00002439
AMCG00002451 mRNA downstream 185373 14878149 ~ 14911316 (+) True AMCG00002451
AMCG00002450 mRNA downstream 229646 14922422 ~ 14946523 (+) True AMCG00002450
AMCG00002449 mRNA downstream 258262 14951038 ~ 14962371 (+) True AMCG00002449
AMCG00002456 mRNA downstream 680230 15373006 ~ 15378676 (+) True AMCG00002456
AMCG00002457 mRNA downstream 696440 15389216 ~ 15405384 (+) True AMCG00002457
TU154081 other upstream 1562284 13125378 ~ 13129697 (+) True AMCG00002393
TU154058 other upstream 1630296 13058073 ~ 13061685 (+) False AMCG00002388
TU153909 other upstream 2551516 12133786 ~ 12140465 (+) True G122746
TU153704 other upstream 2855812 11835439 ~ 11836169 (+) True G122582
TU153608 other upstream 2997816 11688600 ~ 11694165 (+) True AMCG00002331
TU154987 other downstream 2265385 16958161 ~ 16960082 (+) True AMCG00002500
TU155222 other downstream 3222660 17915436 ~ 17984730 (+) True G123807
TU155458 other downstream 4139238 18832014 ~ 18838531 (+) True G123989
TU155541 other downstream 4437627 19130403 ~ 19132358 (+) False AMCG00002561
TU155679 other downstream 5581313 20274089 ~ 20276255 (+) True AMCG00002573

Expression Profile