RNA id: TU154579


Basic Information

Item Value
RNA id TU154579
length 2284
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G123295
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 15262949 ~ 15340169 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCAACACAAATAAGCTGTCTTGtgtcctttttaaaaagaaaaacgttgACTGGTTGCATTCTCAAATGAATCAAAGATTATTGGATCTATTTATAAACCACCGTATTGCCGTGAATACTGatgaagaaacatttttcatttgaaattgttaaaaatgtcagttttctgTCATTTGTTACTGTAAGGACATTTTACCTGTTGGGTAAACGAAGACGTatacagttaaattattttcataacagAGCAAGGATAGAACCTTTTTCAAAGCAGATAAATcacaaacaatgttttaaactgcATGTGAAAACCAACACACAGGAATTTAGCAACACCTGAGAAAATACGTGCTTCTTTAGGTCTTACTACTGTCCTGAAAGCCacattatttctttttaagtaGTAATTTGCTTTCTGTGTTCCGCCTCCTACCAAACAGGTTGATTATAAATGTCAACAGAAAGCTCACAAAATTGCTGGTTAAGGGGGTGACATGTTGTGGCAATGAAGTGTCCTGACATTTGtgatgtgattttgaaggtgaagaCATTTATTCTCAAACTCCTTTTTGTTGAAAGTGGGGACCAGCTGACCTTTAATGATGTTTTTCAAAGGGTTAATACTGCcattcaagaaaacattttcaattgcatAACCCTTTTCAGTGAACTTTAAGTCAGCAGTAAATAattgaggggaagaaaaaaaaaaactcagataATACAAAGTAGAACCTTTGCATTAACACAGAAAGGGAGCAAGCACACAAACGAAAAGATTTTCTCCCAgatgaaattatttattagtgAAGCAGTCacgattattatgattattttttttatgattttttctGTACATAGTAGTATTCAGGTTATAATAGAAGACTGAATACCTTCTCTCGGATTGCCTTCTATTTTCAGAAGCTAACAGCCTATTAACAGAGCATTCAGAACATATCTCCAGAACACTCAAATTTTCAGAATCGTTGGAACCATTCAAAGGTAGCGGCTGTTGTGAAGGAAAGTAATTACCCTCAATCCAGCTCCTAGTATCTGTACTGTGCTTACAAGAGTAGTGTACACCTTTCACAGTTACATGTTATTTCATTTCTATATCCTGTATGTTTTCTGTGTAATTCTCTTTTGTGGTGTCAATCTTGACTATCATATGCTAGGAACAGTAAGCATTGGGGGAAAGCTTAAATATTAAAGAGGAAGACAAATCCATTGGTATATCATCTAAAGATCTCAAGTCACTCCCAATTGAGTTTTAAGTAACTTCCTCTGTACACTTCCTAGACATTTTCTTATGAAAACCCTTTGCAAAGCCATCCTTAATGAAACAGCTTATCTGCCTTTTATTTAAGCAAAAACGTCAACCAGAAATcacacagaaaaaatgtatgtctgGAAACGACCAATGTACAGTAATCCCTTAATTtgcccagaaaaaaaaaatacatatgattCTATTAACAATAATggaattttatatattttttaatttaactgtgtGATTTACAAGGCATTGATTGTAAGAGAAAATAGCAGATATAGATAACCAACATACAGCTTTAAAGGAGCAAATATAGTCAGTTTTACCGTAGTCTGTATAAAGTATTTCTCAGATGTCAGAATTCCAGTCCCCAAAATAATTTTCTAGAACAAAAACATCTACAGAGaacaaagtttgttttattacagtatgTACCGGCATTCgtcttaagaaaacaaaatctatttgCAAAAGTGAATCTTTGCAGTAAAATTAATGTCAGTCTTCCCTTTGCGAGGGATCTCTCTGAGACAAGAAGGACTCTTATTGACTGAGCATACCTATTTAAATTGGAATTAGTACACAACATTGCATCCGGAGGTCCACCCTAGTGTTATACCAGCAAAACAGTCCTGTAGTGCTATGAGCNNNNNNNNNNaaaaaaaaaaaaaaaaaaaaaaaaacacacaaagcaaataACAGACAAACAATAGAAAGGTATGTTAGAgcagagagaaataataaaattgcatttggaGAAATAACCAAAGTAAGGTAGACAAAAGCAGTTATTGGTCTAAGTGCATCCCCACAGCTGGAGTGCTTTACTACTGGGGGTAGTAGGgctgctggggctgctggggctgctggggCTGCTGCTGGTAGGGGTAAGGGTGTTGCTGGGGCTGCTGGGCCCCAGGAAAAGGTGCTTGTCCTGGAGTCTGGTACATGTACGGCATACCATACTGACCATAAGCATAGGCATTGTAGCCCATGGGCATCGGGACATACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154466 lncRNA upstream 644812 14691981 ~ 14692776 (+) True G123197
TU154429 lncRNA upstream 967675 14369093 ~ 14369913 (+) True G123171
TU154427 lncRNA upstream 971253 14365036 ~ 14366335 (+) True G123169
TU154415 lncRNA upstream 976052 14353397 ~ 14361536 (+) False AMCG00002437
TU154277 lncRNA upstream 1746907 13572519 ~ 13590681 (+) True G123043
TU154711 lncRNA downstream 349432 15689601 ~ 15689963 (+) True G123386
TU154713 lncRNA downstream 454239 15794408 ~ 15795149 (+) True G123388
TU154813 lncRNA downstream 1145657 16485826 ~ 16489952 (+) True G123468
TU154876 lncRNA downstream 1311373 16651542 ~ 16651964 (+) True G123525
TU154877 lncRNA downstream 1313330 16653499 ~ 16654884 (+) True G123526
AMCG00002449 mRNA upstream 375217 14951038 ~ 14962371 (+) True AMCG00002449
AMCG00002450 mRNA upstream 391065 14922422 ~ 14946523 (+) True AMCG00002450
AMCG00002451 mRNA upstream 426272 14878149 ~ 14911316 (+) True AMCG00002451
AMCG00002443 mRNA upstream 650618 14686068 ~ 14686970 (+) True AMCG00002443
AMCG00002441 mRNA upstream 671364 14655853 ~ 14666224 (+) True AMCG00002441
AMCG00002456 mRNA downstream 32837 15373006 ~ 15378676 (+) True AMCG00002456
AMCG00002457 mRNA downstream 49047 15389216 ~ 15405384 (+) True AMCG00002457
AMCG00002458 mRNA downstream 94741 15434910 ~ 15483656 (+) True AMCG00002458
AMCG00002459 mRNA downstream 144302 15484471 ~ 15505734 (+) True AMCG00002459
AMCG00002461 mRNA downstream 239563 15579732 ~ 15606498 (+) True AMCG00002461
TU154081 other upstream 2207891 13125378 ~ 13129697 (+) True AMCG00002393
TU154058 other upstream 2275903 13058073 ~ 13061685 (+) False AMCG00002388
TU153909 other upstream 3197123 12133786 ~ 12140465 (+) True G122746
TU153704 other upstream 3501419 11835439 ~ 11836169 (+) True G122582
TU153608 other upstream 3643423 11688600 ~ 11694165 (+) True AMCG00002331
TU154987 other downstream 1617992 16958161 ~ 16960082 (+) True AMCG00002500
TU155222 other downstream 2575267 17915436 ~ 17984730 (+) True G123807
TU155458 other downstream 3491845 18832014 ~ 18838531 (+) True G123989
TU155541 other downstream 3790234 19130403 ~ 19132358 (+) False AMCG00002561
TU155679 other downstream 4933920 20274089 ~ 20276255 (+) True AMCG00002573

Expression Profile