RNA id: TU154664


Basic Information

Item Value
RNA id TU154664
length 2526
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G123346
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 15481144 ~ 15483716 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACACATCACCTTGCACGGTCATTTGAAATGTCTTTACAAAGAGCACGCAGGAGAGCTGCTGTTCAGGTAATGTTATGTACAATTTTATTGCCGGTATATGCACAACTGTAAGCACAGGtctataaatacacaaagtaaCAGAACAGTGAAAACTAGAATGTTACACTcacaaagagaagaaaaaaaaaaaatcgactattagaaaaaaatgtgaCTGACATTGTTTTGCCTTCCAAGtctgtaaatacatttctacaaatTTCTCATTGAAGAAAAAGGACTAACTtttgcaacagaaaaaaaaacaaaaaaatgaaaaaatgaaaagatcaaTGCCAACCCTTTAACCTTCTGAACACTAACTCTCCACACTGACCTTCTTTTACATGAGATTTGTATTTGGATGcttttctctttaaataatAGCCGATATCCGGCTGCACTTGCACACCATGTGAATCACCCCCCTAGAACGGAAATGACATCAAGCACGAAAGCAGCATTTCAGATTGCCGTTAACAGATCAAGGCGGCGGCGCTCTAAAAAAGCATGGAGTGTGGCGGGGGTGGGAAACAGCGGAAGGTCATTCACAAAGAATTGGAGAAACTGACCTGTATCAAAAGTCAGAGAGGTATGCAGTCTGTAGGCCGCAACGTATTCCTTTTGACCTTCTGCACGTACCATGTATGCACTGACACCTGCTGTGTTAGAGACCCCTCCTCCGAATTCAGAGAAAATCCTCAGCTGGCAACAATCACTCATCACACATTAGAAGCTTCTGGGTAACCTGTTAACTGTACACTGAACTGTCAAAACAGAACAACACTATTCCTGCAGCCACACTCCCATGTCCTTTTCCCAGTGCTCAGAGGTGGGAGTGCTACATTGTTCTCAAACAGCTGTGGTCATATGATGGTAAGTAAGATACCAACATGATCCACTGAAAGCACCATagcagaggggaggggggtacaAAAAAAGAGGAATGTTTCCTTGTATATCAGTTAGAGCCATGCAGATGTAATACCACTGAATAAAACGCGAGAGGCATTAAGTTAGTCTTTAACATGTCTATGGTGTAACGCAAGAGCAAAATTCAAAAGCCTCCATATCTGTAGAGCTGGCTTGCACCACACTGGTACAAAAAGTCTTTGAGAGAACAGAGATGACGATAAACTCTTGGGGCGCTTGTCCAGTGAAACCTACCCTGAGGCCTGGTTCTTGTAGAAATGATGGCCGGCGAAGTGAAGCGGACATCCATTCACTGCCCCTGTAAAACCCACTGGGCATTCAGACCAAATCACTCATCCAGAGACGGGCGGCCATTCTACCACACCCTCTTCCTTTCGCTGTGGAAGAACGTGCACCATTCAAGaaaagctaaagAAATTAATCTCAGAGTGACAGTAGCAGTACTATTCTCCAcaaaaaaacagccttttaaGTTTGTAGAAACATGTAACTGTAAATTTCAGAATTAAAACTATTGCCATAACATATTCCTAAGATGTTCATTTATGTTCATGACCtgaatggcattttaattttccGTACTAGAAAATGCAACACATAGGTGCTTATTACAGTTAACTACAAGGCTTTGTGAATTCCCACCTTGATCCTGCAAATCAGCAGCTGGGACATTCACTTTTCTTACAAGTTACCGctgacaaaagacaaaaaccaAAATGTTTCCGGACATTCGGTTAACTCTGTACTCTGTATGGGAGTCAATGAAGAACCGGCGGTACAGTTAAAGACTGTCAGTCAGCTTGCTCGGAGGATGGCTTTGCTGTGTCAGGTCATGAAGCAGGACAGTTGAACTGTTCCACGTCTGTGGCTAGATAAAaccttttatttctttctttatattaatttcaTGATGGATTTCAGCTACCACAacaacaatttttttaattatttttttaaacacattcttaaaaatcaaaattAGAGACTTTATAGATAAAAGCAGTGCTGAATCTGAAACTTTATTCCCCTAAgcttaaaagcattttctggagtttcatcatgtttttttttttagtttttcagtaTTTAACAATGTCTATCTATAACACTGATACGACTTAAATCGGGGAAGACTGAAGGGTACAGGGAGGGctgcaagaaaaaacaaaaccacaacaaaacaaaagtgtgacCAGAATGTTGTCAAAAGCggatttaaatttgatttttcttCCCTTGTAAAACCTCAGTTCCTCTTCACGAATGGACACTTAATACTGTACCCCCTCCAAATCCAAATAACTTAGTGCAACAGTTAACATGCAGGCTGGAGGGAAAGCCAATCCAGTACGGACAGGAAGGGACAGGGGAGAGGAGCGCTGGCATGGCGAGGGGGATGTGGAGGTGATGACTTGGCTTCCCGAAGGCGCGAGCGAGCCCCAGTCTCTGCCGGCTgccggtgggggggggggctaggTGGTGGCTCTCCCTCTTTACGGGCCGGCGATGTCTGCCGTGGGGTCAGTGCCGGCTGAGCCCGTCTGAGCGCGCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154473 lncRNA downstream 788145 14691970 ~ 14692999 (-) True G123204
TU154437 lncRNA downstream 886602 14588809 ~ 14594542 (-) True G123179
TU154436 lncRNA downstream 892386 14587214 ~ 14588758 (-) True G123178
TU154435 lncRNA downstream 914077 14566247 ~ 14567067 (-) True G123177
TU154433 lncRNA downstream 938124 14542821 ~ 14543020 (-) True G123175
TU154710 lncRNA upstream 203739 15687455 ~ 15689341 (-) True G123385
TU154729 lncRNA upstream 239217 15722933 ~ 15723137 (-) True G123401
TU154733 lncRNA upstream 306889 15790605 ~ 15795172 (-) True G123405
TU154794 lncRNA upstream 640566 16124282 ~ 16127405 (-) True G123452
TU154833 lncRNA upstream 996313 16480029 ~ 16480293 (-) True G123488
AMCG00002455 mRNA downstream 118576 15338087 ~ 15362568 (-) True AMCG00002455
AMCG00002454 mRNA downstream 369278 15060847 ~ 15111866 (-) True AMCG00002454
AMCG00002453 mRNA downstream 475800 14976106 ~ 15005344 (-) True AMCG00002453
AMCG00002452 mRNA downstream 560639 14911455 ~ 14920505 (-) True AMCG00002452
AMCG00002446 mRNA downstream 631370 14795087 ~ 14849774 (-) True AMCG00002446
AMCG00002460 mRNA upstream 24732 15508448 ~ 15534012 (-) True AMCG00002460
AMCG00002463 mRNA upstream 123325 15607041 ~ 15616265 (-) True AMCG00002463
AMCG00002464 mRNA upstream 142482 15626198 ~ 15630089 (-) True AMCG00002464
AMCG00002470 mRNA upstream 339513 15823229 ~ 15837658 (-) True AMCG00002470
AMCG00002472 mRNA upstream 355163 15838879 ~ 15923127 (-) True AMCG00002472
TU154543 other downstream 534833 14941260 ~ 14946311 (-) True G123263
TU154299 other downstream 1826908 13649228 ~ 13654236 (-) False AMCG00002421
TU154046 other downstream 2451738 13028197 ~ 13029406 (-) False G122862
TU154047 other downstream 2451738 13028197 ~ 13029406 (-) True G122862
TU153859 other downstream 3474793 11995828 ~ 12006351 (-) True AMCG00002368
TU154950 other upstream 1352440 16836156 ~ 16839722 (-) True G123585
TU155250 other upstream 2438736 17922452 ~ 17989465 (-) True G123829
TU156333 other upstream 7602278 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 7698205 23181921 ~ 23185168 (-) True AMCG00002629
TU156457 other upstream 8777849 24261565 ~ 24261823 (-) True G124829

Expression Profile