RNA id: TU154711


Basic Information

Item Value
RNA id TU154711
length 363
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G123386
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 15689601 ~ 15689963 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

taacacatacactcacctaaaggattattaggaacaccatactaatactttcgccccctttcgccttcagaactgccttaattctacgtggcattgattcaacaaggtgctgaaagcattctttagaaatgttggcccatattgataggatagcatcttgcagtcgatggagatttgtgggatgcacatccagggcacgaagctcctgttccaccacatcccaaagatgctctattgggttgagatctggtgaatgtgggggccagtttagtacagtgaactcattgtcatgttcaagaaaccaatttgaaatgatttgtgACATgttgcattatcctgctggaagtagccatcagaggatgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154580 lncRNA upstream 349432 15262949 ~ 15340169 (+) False G123295
TU154579 lncRNA upstream 349432 15337588 ~ 15340169 (+) True G123295
TU154466 lncRNA upstream 996825 14691981 ~ 14692776 (+) True G123197
TU154429 lncRNA upstream 1319688 14369093 ~ 14369913 (+) True G123171
TU154427 lncRNA upstream 1323266 14365036 ~ 14366335 (+) True G123169
TU154713 lncRNA downstream 104445 15794408 ~ 15795149 (+) True G123388
TU154813 lncRNA downstream 795863 16485826 ~ 16489952 (+) True G123468
TU154876 lncRNA downstream 961579 16651542 ~ 16651964 (+) True G123525
TU154877 lncRNA downstream 963536 16653499 ~ 16654884 (+) True G123526
TU154926 lncRNA downstream 1102137 16792100 ~ 16792799 (+) True G123568
AMCG00002465 mRNA upstream 34067 15643729 ~ 15655534 (+) True AMCG00002465
AMCG00002462 mRNA upstream 65855 15617380 ~ 15623746 (+) True AMCG00002462
AMCG00002461 mRNA upstream 83103 15579732 ~ 15606498 (+) True AMCG00002461
AMCG00002459 mRNA upstream 183867 15484471 ~ 15505734 (+) True AMCG00002459
AMCG00002458 mRNA upstream 205945 15434910 ~ 15483656 (+) True AMCG00002458
AMCG00002466 mRNA downstream 24292 15714255 ~ 15723162 (+) True AMCG00002466
AMCG00002467 mRNA downstream 108011 15797974 ~ 15821024 (+) True AMCG00002467
AMCG00002468 mRNA downstream 161384 15851347 ~ 15852485 (+) True AMCG00002468
AMCG00002469 mRNA downstream 232842 15922805 ~ 15934434 (+) True AMCG00002469
AMCG00002471 mRNA downstream 280121 15970084 ~ 15973147 (+) True AMCG00002471
TU154081 other upstream 2559904 13125378 ~ 13129697 (+) True AMCG00002393
TU154058 other upstream 2627916 13058073 ~ 13061685 (+) False AMCG00002388
TU153909 other upstream 3549136 12133786 ~ 12140465 (+) True G122746
TU153704 other upstream 3853432 11835439 ~ 11836169 (+) True G122582
TU153608 other upstream 3995436 11688600 ~ 11694165 (+) True AMCG00002331
TU154987 other downstream 1268198 16958161 ~ 16960082 (+) True AMCG00002500
TU155222 other downstream 2225473 17915436 ~ 17984730 (+) True G123807
TU155458 other downstream 3142051 18832014 ~ 18838531 (+) True G123989
TU155541 other downstream 3440440 19130403 ~ 19132358 (+) False AMCG00002561
TU155679 other downstream 4584126 20274089 ~ 20276255 (+) True AMCG00002573

Expression Profile