RNA id: TU154733


Basic Information

Item Value
RNA id TU154733
length 4568
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G123405
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 15790605 ~ 15795172 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAAAGTGTTTTATTAGCATTatctttctgttcttttttcccctcataaCATCGTGACACAGTGTTACAATGGTATATCGATGCTGGGTACAACAGGACGTCTGTAACTTGTACAGATAACATAAAGCAGttgtttgaaaacatgaaataagttctagaaaaaaaaaatggaagaaagaaCCCAACACATCCCATTGTGTATAGTTCAGAACCTGGTAAATATCCCAAAACAAATTttcaaactcaaactcaaacaTCTCCTACTGACAGCTGGAATGGTTGAGGAGACAGGAGacttagaaaaataacaattgaaCAAGCaagacatcaaataaaataaatatatattccattgTACTACATTCATACACATTTGACAATTAGTGCTGAGGGACTCTTTTAGATTGTATTGACTAACGTGAGTAGGAATTCAAATACTTGAACAGTACATTTCTAAAACCCATCTCAAACCTCATTTCAGTCGATCAGCTAGCACCTCTGGAATTAGCCTGATACAGCGGGTGCAAAAGAGTTCCAACTTCCATacatctgaaataaaaacaacgtACAACTTGATGTGCTTATcgaaggaaaaaacaaaggccGTGATCAAAGATTGGGacttcttttgttttccaactGTAAAAGACATAACAGGTACATAGAAAACAAATTTccccaaaaaataacattgtgatgcttttcactgtattacaaaatgttatctaaaatatttttgtttttgttttaaaacttctacattattttacacacacaaaatgtccatgtacacatacatgtatGAACAATTTAAGCTTTTTACAGGATTACACGTTGGACAAAATGTGGCACATTGCCTTATAAACTATCCTTGaaatattttggtttaaaaaataatgcttttaatcaCTTATGACACAAGTTTAAAACAAGTATGCTTTAGCTGattctgtgtgtggggggggggggggggggagtaagAAAATCAAAAGGAGCTGTATTGCCTCAAAGATACTGTATTAATACTAACATAGTCATGTTTTTTCATGGAACCTGGAATCAGTactttgagtttgtttttcttaaagagAACATCAAGTGGGGAAGgctgtaattgtttttacagAGAAACCAGCCTAAATGCCTTATTTATTAAGAACAATGTGTCCCACTTGTTCACGACAATGTGAACACACCAACACATACTCAAGCACAGGCTTCTGTTTGAAAAgccactttccttttttttctttcggcCTCTAATAAATCCAAACCTGTCACATTTAATTAGTCAGTTTAGGGTGCGGATGAGGATCTGGAAGTTATTTTACTTTCGTCTTAAGACCAGTCACTTTGACGTGTCACGTTTCCAATATTATTAATCCAGAGGATAAACATGACCTTGGCATGCTCAAAAATAAGACATCTAAGGTTACAAAGGGGTTAAATCCAGTTTATAGCACATATTTAATCACTGAGCAAATGAAAAGGGGTCAGAATGGGCAAGTTGAGTGCACAAGCAACAGTGTTTCAAGGTAACAGtgcacagattaaaaaaaaaaaaaaatctctttggAAATACCACTTTGATTTAACAGATTGACTTTTAACGAGGAACCCAacaaagcttgttttgaaagggTCCTCGTCTGACACCCCAGAGTCGCGATTTCAGCAAAAAGAGACCAGGAATATCACAGTGTGATCGTGGGAGGTCGTCGTCAGCTCCAGATATTATTCTTAGCCATTTCAGAATGGGGAGTATTCATTTACTGTTCAGTGGTACCACATGTTAAGAGCATGAATGAAACTGGTACGACTGGCTCAATAGACGTCAAATAAGTGCATGTAGGCGTAGTGGTTAGCAGGGATGGATTAAGGAATGGGAGGCTGTGGGTTTGATCCCAGACTGGCGTATGTCGAAAATAAATTCTATGAGCATGGCTGATGTTTTTCTGGAGGATAAATTGTCTTTGATGTCGTACATCAATGGAGCAcattttttctgtctgtcagcccctttattttccatgtatttatattatgaaACTGACAAATTTCTTAGTGCCACCAGACTCCAGCGGGCCGCTCACCATTTGGTTCAGTCATTGAAGTGGATGGCCGTGTTACATGTATCAACCAGAAAGTGTATTTCTCAGCTATGCAGAACTCCGCACACATGCACAGCGTTCATTCTATTATAATgtgatacaaataatattgttcTTGGCCGTAAATATGCAGTTTAGCTGAACGCCATAGTCCTGTGTTGAAGGAGCATCACCAGGCACTTTCTTTCACTTGAAATAACTGATTTCACTGAAGTTTCCATGTAACTGTCATTTTTTCCCTCACAAACCTTTCAAGACTAAAGATTACATCAAGTATTTCTGTAGGCAGGCACAAGAgctatttaataaaatatacaggtaGGACAGCAAATAAACATTAGAGATTGAATGTGAAGGTGTTAGTAAAAAAGTAAATGCCTGATTTTATATTCAAATCATGCTGACACAGTGCTTTATTATGGAAATAATGTTGATAACTAGAAACAATGAGTTGTGGCTCTAGGTCTTGCCTAACATTCAATGGATCACATTCAATGGAAATTCAGCAATGAGTTCCCGCTGCAGACAGCCGCAGTGCACACAGAGAACATGCAGTGCTGGTTTTATGTGACTGTCAGATTACTACCTCACAAACCACACAAAGGAATACAACAGATCAGTCAAATGGTGACAAACCTGAGGCCAATTCCTTGTAAACAAACAACCAGTCGGCATTGAATCACAGCTTTCTCTATGGGGAGAAATCAACAAAACCCCACAATGCGTTCCAGTGATACGAACACTAAAGAGTGGAGCGGCAACATTCTGgatgctttgttttatatatgtatatatgtattatgaaaCTACTGatttacataattgttttaatatacattgtagTAACTATAGACCTATAATTAGGAAAACTGAgaacttaaaaatatatgaacagcTTTGGAACAGTCACTTGCTTTAATCACAGTATTTAGTCCTTACTCTGAGCCTACAAGtaatattctgttttgtttgggggggtttgtaatttttttttaaataatttaatcatatttatacatttatctgTTATGAAATAAAGTACctctattttattcttaaatgcTAGCAATACAGTACCTTTTTGAAATCACTAGGAACAAATAATGTCTCAGTCCCATTTCAGACACCAGAAGTGTGCCAGTATTTAGGGAATTACAATTATGATTTGCAGTGTGTTTCCAATTTTGATTGTAGACGTGTGTTTAATTACAGTACAACCACAAGAATGTGTTTATATTGATACATAAATGAAGGGATATTATTGATGCTATAGATTATGACTTAATATGAGGAATGAGAGGGGTGTGTAACAAGACACTAGAGGTTGCAGCCATTTGTATCCTAAATACCTCTGTAGGATATAAAAGCTGTGCGGATATGCAAACATACTctaagagaggagaggagagaaaactGGCCTAGGAAAATGAATTTGCTCCCTTTAACACAGGCAGAAAACATCTATCCAATGAGATGGCGTACAGATAAAATGGTcggtactgtgtgtgtgttgcgaAATAATAAAGTACTCTCGTTCTCTTCACAGCTTGAAAAAGATTATGTCTATTTCTATAATTGTTTTCCATTATGTGGGATTGCAATGTaggaatacatttcaaaccACATCCTCGCTGTGTGGAAAAGCGCCCAAACATCGATGGATCCCAGACGAGCGACAAAAAGATAGTCGTAAGGACTCGGTTAAAGTGCTAGCAAGGTCAAGACAAAACTCTTGACATCAGCAGTGTCAACCTGGGAAATAAGCCTTGTttttcactatttatttaaagccCAGCCAGTGTACTGTGCTGCAGATTTCAAACTAATTCATCAACCAAGGCTAAGAAGCTAAAAAGCCAAGAAGCCATAGCTGCTAGAAGACATGGGTAcctttgccaaaaaaaaacaacaacaaaaaaacacaataacaaataaatcatcGCAGTGTGCAGGTTTCACTGACAATTATACCTTCTTCTGAAACAGAAAAGTAACAATACTATAACAGAATAATCTGGACCCAGTGGCCAAAGCAGGGGACTATTGCTTTAGTCATTGTTTCATCATAAAGGATGCATTATATATCCGATACTGTTTATtctaagcagtcattgtttacTGCATTTCAGGGAACTTTCttctattctattttttttttttttttttagttcttttGGTTGTTTAGTTTACTTGagggagacaaaaaaaaaaagtgagcttcagagaaagcatttgaaataGATGCGCTCTCCCAAGTGTGTTTAGAAGTGGAACTCATTCCCAAGGTCTTGGATGGCTGCTCGCCGAACAATGGCCGGGAATGACAGACAGCCGCTCAACCGTCCTCCGTCACAGCCAACTTCTCCTCTCCCGGCTGCTCTGTGGCATCTGGGAAGCAGACACAGTGAAGAAAGGTTACTCACAGTGATGGAGCAAAACACACTGAGCTGGATTACCA

Function

GO: NA

KEGG:

id description
ko04727 GABAergic synapse

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154729 lncRNA downstream 67468 15722933 ~ 15723137 (-) True G123401
TU154710 lncRNA downstream 101264 15687455 ~ 15689341 (-) True G123385
TU154664 lncRNA downstream 306889 15481144 ~ 15483716 (-) True G123346
TU154473 lncRNA downstream 1097606 14691970 ~ 14692999 (-) True G123204
TU154437 lncRNA downstream 1196063 14588809 ~ 14594542 (-) True G123179
TU154794 lncRNA upstream 329110 16124282 ~ 16127405 (-) True G123452
TU154833 lncRNA upstream 684857 16480029 ~ 16480293 (-) True G123488
TU154834 lncRNA upstream 686396 16481568 ~ 16483051 (-) True G123489
TU154874 lncRNA upstream 853235 16648407 ~ 16651454 (-) True G123524
TU154878 lncRNA upstream 858327 16653499 ~ 16654863 (-) True G123527
AMCG00002464 mRNA downstream 160516 15626198 ~ 15630089 (-) True AMCG00002464
AMCG00002463 mRNA downstream 174340 15607041 ~ 15616265 (-) True AMCG00002463
AMCG00002460 mRNA downstream 256593 15508448 ~ 15534012 (-) True AMCG00002460
AMCG00002455 mRNA downstream 428037 15338087 ~ 15362568 (-) True AMCG00002455
AMCG00002454 mRNA downstream 678739 15060847 ~ 15111866 (-) True AMCG00002454
AMCG00002470 mRNA upstream 28057 15823229 ~ 15837658 (-) True AMCG00002470
AMCG00002472 mRNA upstream 43707 15838879 ~ 15923127 (-) True AMCG00002472
AMCG00002473 mRNA upstream 146934 15942106 ~ 15950022 (-) True AMCG00002473
AMCG00002474 mRNA upstream 156061 15951233 ~ 15989035 (-) True AMCG00002474
AMCG00002475 mRNA upstream 243229 16038401 ~ 16045090 (-) True AMCG00002475
TU154543 other downstream 844294 14941260 ~ 14946311 (-) True G123263
TU154299 other downstream 2136369 13649228 ~ 13654236 (-) False AMCG00002421
TU154046 other downstream 2761199 13028197 ~ 13029406 (-) False G122862
TU154047 other downstream 2761199 13028197 ~ 13029406 (-) True G122862
TU153859 other downstream 3784254 11995828 ~ 12006351 (-) True AMCG00002368
TU154950 other upstream 1040984 16836156 ~ 16839722 (-) True G123585
TU155250 other upstream 2127280 17922452 ~ 17989465 (-) True G123829
TU156333 other upstream 7290822 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 7386749 23181921 ~ 23185168 (-) True AMCG00002629
TU156457 other upstream 8466393 24261565 ~ 24261823 (-) True G124829

Expression Profile