RNA id: TU154794


Basic Information

Item Value
RNA id TU154794
length 1894
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G123452
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 16124282 ~ 16127405 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATCACTTCATAACATGCCAACACATACAATAATTGTGCTTTGCCCCTTGAAACAAATAGACATGCACACAACAGAGCAAACAGCCTGACAATATACATCtctttaaatgaaaactgttAATCTTAGAACGTCTGTTTGAACATCTCAGACATCAAGGGGTCCACATGTGGGTTTTTTTAGGCAGTAAAGACAGGAGTCATACTTGGTGTCACTCACTTAACAAAtctgatgtttatttaatttgacaaacCAAATATACTAGTTTTTTCACCACAGATATAGCACTTAATCATCTGCCTTGTCTCAGATAGACAGACTGAACTTCTCCAAATTAAACTAAGAGATGAATGTAAAAGTCAACTtctgacacaaaaaaacacGTTTCACATCAAAAGGACACGTAATGTGTACTTGCATTTTATCAGGGCCTCAGAGGCTAACATCAGTAGAAGCTATTAAATAACAAAGTTTAGTTGAAgtgtcacattttgtttgtgggCTAGGACAGTACAAGAGAATGAATaccatttagatatatcttattgtatgtgtgtttgcattaaCTTAAACCACAGTCAAAACATTCTTATTTTCGGTTTAACAGTTCATTTagcagaacattttttattcttgcttATTAAATAACTTACATCATCTATGTTctgttataaatatttgatataaaAACCCAGACTTTGTGCAATATTTCCATTGGTACAGGGACACAAGAGATTTTAAGTAAGATACTATGCGTTTGTTAGCGCAAAGAGGTAAAAGGCAAACAACAGGAACATGATTATATAAATTTGTATCGAAGGGAAAGTCTACTTTTTCCCCCATGTGCCGGAGTAATTAGCAAAAACACCACCCTTTCATGGCTTTGATGCAAATCTTTTAATATTACTGAATGCTAATTATCACGTTAGCTGGGGTGAAATTAATTTATACTTGCAAAACATACCTGTGGTTTTGGGCTTGAGTTTTAAGAGCAGAATGTCTTATACAGCTTCCTTGGACTTTGTTGGACATTTTCTtcatctaattaaaaaacaagatgcACTACTTGTACTATGCTGGGATGTTAGCCcgaaaataatttgttttctgagaATCAGAggctttttgtgtgtgaattacattcattttacagaaaccaaccaacacacaaacacaaactctgcatgttacaaaaaagaaaaagaaatgtatggAGCATTTGCTCAGACTCTTGCGTTATCAGATTGAGAGATCTGTGTGAACTCTAAATATACTTAACATGATGATGCTTATGTGATGAATATGGGTCCTGCTGTTTAATCTGAATTGGTAGTTGTACATCAGATTCTGTACAAAAACTATGTGCATGTAATGCAACTCAAAGAAAAGGACTTCATTTCCCAACATTTTATCATCTTACTGAAGGGAAAGTCTATTTCTGACCCGGAATAGGAATGCTTTATAAAGACCTTTACCATTTTCTATAACTACATTGATTAGAAAGGCATCTGCTAGCTGAATTTTCTCCCCCAACTGTAGGTTCACCCATTGGTCGCCTACTGAGTGAATCTCGTGGCTACATACTTGTAGGAAGtttctgttgtcttttttttgtaggAATCCCAGTCTTTTCAAACTCTGCCTTTTCTTGCAAATACTCCTGTTTGCATTCTTCATAAAACACAGGATCCTTATagctgaaagaaaTATGTTGTTAGGCACTCCTTCAAGGCCGCGTTCTGCTCTCGACATTTTAAGACCATGAGGAAGCCGCTCTCCTTGCAGCAGTGGTTAAAGGCTGAAAGagattaaataatcaaatagaTATATTAGAGCAATGCCGCGCTGCCTTCTCTCACACGCTTGTCTCTACCACTTCTACATATTAAGAACAGC

Function

GO:

id name namespace
GO:0009055 electron transfer activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154733 lncRNA downstream 329110 15790605 ~ 15795172 (-) True G123405
TU154729 lncRNA downstream 401145 15722933 ~ 15723137 (-) True G123401
TU154710 lncRNA downstream 434941 15687455 ~ 15689341 (-) True G123385
TU154664 lncRNA downstream 640566 15481144 ~ 15483716 (-) True G123346
TU154473 lncRNA downstream 1431283 14691970 ~ 14692999 (-) True G123204
TU154833 lncRNA upstream 352624 16480029 ~ 16480293 (-) True G123488
TU154834 lncRNA upstream 354163 16481568 ~ 16483051 (-) True G123489
TU154874 lncRNA upstream 521002 16648407 ~ 16651454 (-) True G123524
TU154878 lncRNA upstream 526094 16653499 ~ 16654863 (-) True G123527
TU154999 lncRNA upstream 830757 16958162 ~ 16960107 (-) False AMCG00002503
AMCG00002475 mRNA downstream 79192 16038401 ~ 16045090 (-) True AMCG00002475
AMCG00002474 mRNA downstream 135247 15951233 ~ 15989035 (-) True AMCG00002474
AMCG00002473 mRNA downstream 174260 15942106 ~ 15950022 (-) True AMCG00002473
AMCG00002472 mRNA downstream 201155 15838879 ~ 15923127 (-) True AMCG00002472
AMCG00002470 mRNA downstream 286624 15823229 ~ 15837658 (-) True AMCG00002470
AMCG00002477 mRNA upstream 2035 16129440 ~ 16154565 (-) True AMCG00002477
AMCG00002481 mRNA upstream 440931 16568336 ~ 16582900 (-) True AMCG00002481
AMCG00002487 mRNA upstream 531493 16658898 ~ 16672579 (-) True AMCG00002487
AMCG00002488 mRNA upstream 562431 16689836 ~ 16734523 (-) True AMCG00002488
AMCG00002486 mRNA upstream 625143 16752548 ~ 16753496 (-) True AMCG00002486
TU154543 other downstream 1177971 14941260 ~ 14946311 (-) True G123263
TU154299 other downstream 2470046 13649228 ~ 13654236 (-) False AMCG00002421
TU154046 other downstream 3094876 13028197 ~ 13029406 (-) False G122862
TU154047 other downstream 3094876 13028197 ~ 13029406 (-) True G122862
TU153859 other downstream 4117931 11995828 ~ 12006351 (-) True AMCG00002368
TU154950 other upstream 708751 16836156 ~ 16839722 (-) True G123585
TU155250 other upstream 1795047 17922452 ~ 17989465 (-) True G123829
TU156333 other upstream 6958589 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 7054516 23181921 ~ 23185168 (-) True AMCG00002629
TU156457 other upstream 8134160 24261565 ~ 24261823 (-) True G124829

Expression Profile