RNA id: TU154874


Basic Information

Item Value
RNA id TU154874
length 2545
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G123524
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 16648407 ~ 16651454 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNNtttttttttttttttttttacacaaacttgaattttattttgtctaCATTTGAACAGGATTGAACCAAGTCTTCCGcaacaatgtaaaaatgtaaacctgggcgagggaggaaaaaagaaaaacaaacgaaAAACATTCCCAGGAATACAAGTGATTTAAAGAGGGCTGGGTGGGGAGTGCCAAGAGCATAGCTCTGCTAAAACAGGGCaggaaacaaaccaacaaaatccAGAGGGAAGAGATTTAAAAGAACactaatgatacaaaaaaaaaaagaatattgtACATCTTCCCAAACACAATTTCCATGAATAAGGCTTTACCTGaaccatttcatttacatttttaaatcataaaaggtacattttagtttttccccatttttgttttttagtctttttttgttttgttacaccAGCATCtaattttacagttgatggaATAAACATGTTAACTTagaaaaaaagtacaattttataTCTTGTGATAGGATGCGACCATCCCCTTCAAATCTTCATATGCTTCCTTGCCACTTATTAAttgatgtaaataaatattgaacagTATTTCAAGTTCATAAAGTGATGTGCTAGATCAATATGACACCCCGTGCTTAAGTCACTAATGCCCACATTCTGGCATATAGGATGACAGGTTGACatcatttactttaaaaacacaaaggaaaaacacatatataGCAAGTTAGCACAATAAAAGGAGATGACACCCGACACTGAAAAAAattggtaaatatatatattaaaaaaactaaacaaacaaaggaTCAAGAAAGAAATCAAGAGGTATACACTGACTTTGAGAACATAGTAATGATTAGAAGCCCTCAGTTTCCTATGCAGGATGTGATCTGTAGACTTGTCACCTTTTTAAAAGCCAATCAGAGCTCCGATGCTGTTCTAGGGTACAGGTGTGCATTCGTTTCCAGGGGCGGCTTTGATTACGGTTCGTAACAAGCGGCctgctttgcatttcaaatttgCAGAGATATTTTGCCTTTTGTCGGCTTTTATTGCAGCTTCAAAAAACACCCCAAAACTCGGAGGCCCGCTTTAGGAATTTAACAGCAGCTTGTGTGGATGTCTTGTATATAACAGGAGAGCTAACTGATGAAAGTGTGGGCTAACACCCCTGGCTAGACTAAAAGCTTATTCTTGGAAGATGGAAGAAAATAATCTCTCTGACCTGGTACAATAAAGAATTTTCTCTCAAATCAAAATCGGTTTTATCTAGCAGCAGAATATACAATCTAAGTatagtatacaaaaaaaattcaCATTCTTCATGAAATATCCTTATAGTTACTGTAAATCCAGCTAAACAAGTTAttgcattcacttttttttttttcatactgcaTGTTGTAAACAAAATCTGCTGCAATAAAAAAGTCACTTAAGTAGCCAAAGAAATCTGCTTATTTAAAGTCACCACAAAaatccaatatatattatataacccttttagatattttctttatataacatatttacacgtgtggaaaaatgtatgtaatttgttttctttgcaaagaCTAAGGAAACCAAGCTAAGAGAATGCATTGACAGAACAGCTCAATTTCTTTATAAAGTGTTCCTCCATACCGTATATTGTCTTGTCTGTACACGCGTCAGGAACTATAACCCCTCTTAGCGTTTTTattaaggattttaaaaaggtaaCAAGTTTACATGTGCCAAGGATGAAATAAGAGGGCTCTTTGGTGCAATCACTcccagtttaatttattttcattttgagattTATAGGATTATATAATATGTACCACATCATAATTGCTGCCAACCCAGTTCAGCAGCTTTCTGCCTTGCCAGCACATTCAAgtacaaaaaaagtaaatagcGAGACAAAGGTCCTCTCGTTAAACCAATGGATCTCTCTCAAGCTACCTGACCCTGTTCGAGTCTCGGTGGAAACCCGACAGATGACAGTTCTGCTACCCACTTCACTGGGGAGGAGGACCAGAGCTCAAGGCAAAGACTTTCAGGGGTTCGAGATGactgttgttcttgttggttTTCTTGCTTGATTTTCATCTTCATTAAACAGCTTTCTTGTTCAGTTTCTTCCCTTTCTTCAGAGCCAATTTATTCTTAATGTAGCCACGCTTCCTTTTAGCAATCTTTTTTTgataaatacttctgtttggGAATGATATTGGTGACTCGCGGCTTGTGATCCAGTGGCTCCCTGTTCTCCAGTTTCTTGACTTTGTAAATCCTCACCAGCCAGTGCTCGGAGGTGAAAGCTTCCTCCAGGTGTTTGAACTTGATGTCCTTGTTCCCGATCTCGGCATTGCGCGTCCGATCGAAGCCAGGTGGCGTCCGGAAATCCAGCTGAGGACGAGGAAATGGGGAGAGCGTTCAGCACAGTGCACACAGCAGTCTGTAGTGCTGTAGAAGGGCTTCTGGTCTCACTGTGCACTTCAAGTTCAAACTATGAGTTATGCAACACAAGACAGCCTTCTCTCTATTAAACTCATCTAGAGACAGTAAAGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154834 lncRNA downstream 165356 16481568 ~ 16483051 (-) True G123489
TU154833 lncRNA downstream 168114 16480029 ~ 16480293 (-) True G123488
TU154794 lncRNA downstream 521002 16124282 ~ 16127405 (-) True G123452
TU154733 lncRNA downstream 853235 15790605 ~ 15795172 (-) True G123405
TU154729 lncRNA downstream 925270 15722933 ~ 15723137 (-) True G123401
TU154878 lncRNA upstream 2045 16653499 ~ 16654863 (-) True G123527
TU154999 lncRNA upstream 306708 16958162 ~ 16960107 (-) False AMCG00002503
TU155025 lncRNA upstream 329377 16980831 ~ 16982646 (-) True G123637
TU155030 lncRNA upstream 343675 16995129 ~ 17050056 (-) True G123642
TU155036 lncRNA upstream 423858 17075312 ~ 17075549 (-) True G123646
AMCG00002481 mRNA downstream 65507 16568336 ~ 16582900 (-) True AMCG00002481
AMCG00002477 mRNA downstream 493842 16129440 ~ 16154565 (-) True AMCG00002477
AMCG00002475 mRNA downstream 603317 16038401 ~ 16045090 (-) True AMCG00002475
AMCG00002474 mRNA downstream 659372 15951233 ~ 15989035 (-) True AMCG00002474
AMCG00002473 mRNA downstream 698385 15942106 ~ 15950022 (-) True AMCG00002473
AMCG00002487 mRNA upstream 7444 16658898 ~ 16672579 (-) True AMCG00002487
AMCG00002488 mRNA upstream 38382 16689836 ~ 16734523 (-) True AMCG00002488
AMCG00002486 mRNA upstream 101094 16752548 ~ 16753496 (-) True AMCG00002486
AMCG00002491 mRNA upstream 141102 16792556 ~ 16813272 (-) True AMCG00002491
AMCG00002490 mRNA upstream 172775 16824229 ~ 16831271 (-) True AMCG00002490
TU154543 other downstream 1702096 14941260 ~ 14946311 (-) True G123263
TU154299 other downstream 2994171 13649228 ~ 13654236 (-) False AMCG00002421
TU154046 other downstream 3619001 13028197 ~ 13029406 (-) False G122862
TU154047 other downstream 3619001 13028197 ~ 13029406 (-) True G122862
TU153859 other downstream 4642056 11995828 ~ 12006351 (-) True AMCG00002368
TU154950 other upstream 184702 16836156 ~ 16839722 (-) True G123585
TU155250 other upstream 1270998 17922452 ~ 17989465 (-) True G123829
TU156333 other upstream 6434540 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 6530467 23181921 ~ 23185168 (-) True AMCG00002629
TU156457 other upstream 7610111 24261565 ~ 24261823 (-) True G124829

Expression Profile