RNA id: TU154950


Basic Information

Item Value
RNA id TU154950
length 460
RNA type TUCP
GC content 0.50
exon number 2
gene id G123585
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 16836156 ~ 16839722 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCGGTGCGGTAATAACTCGCCAAAGCAGGAAGCGGGATGCAGCCCATTGAGGGGGACATGAAGTCTACGTTTTCAGCGTTTGCGTAATGTCCAAGCGCTAAATTGAGGTAGACCAACCAAAGAAGGGAGACggacatttatttatgtcaagTTAATCGGAGCAAACATGCTGTTTTCTGCAAGCTTGCGCGCCACGTTGCTGTTTGGGATACTCGTTGCATTGGCTTTCGAGATCACGGaaggCGGGCAGGTGACGCTGATACCGGATGCAGACACCTCTGTTGCCATAACTAGATCACTCTCGGGAATTAACTGCACTGTTTGCGTGAAGGACAGATCAAGCATGAAGTGCCACAAAGAGATAACACTAAAAGGAGGCCCCAATGTGTCGGTGGAGTTCACCTGTGCACAGCCCCAGGACGTCTTCACTGTGGCTATCAGCAAGAATATCGGTAAGAG

Function

GO:

id name namespace
GO:0002011 morphogenesis of an epithelial sheet biological_process
GO:0016137 glycoside metabolic process biological_process
GO:0016139 glycoside catabolic process biological_process
GO:1901658 glycosyl compound catabolic process biological_process
GO:1901136 carbohydrate derivative catabolic process biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0090504 epiboly biological_process
GO:0001702 gastrulation with mouth forming second biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154878 lncRNA downstream 181293 16653499 ~ 16654863 (-) True G123527
TU154874 lncRNA downstream 184702 16648407 ~ 16651454 (-) True G123524
TU154834 lncRNA downstream 353105 16481568 ~ 16483051 (-) True G123489
TU154833 lncRNA downstream 355863 16480029 ~ 16480293 (-) True G123488
TU154794 lncRNA downstream 708751 16124282 ~ 16127405 (-) True G123452
TU154999 lncRNA upstream 118440 16958162 ~ 16960107 (-) False AMCG00002503
TU155025 lncRNA upstream 141109 16980831 ~ 16982646 (-) True G123637
TU155030 lncRNA upstream 155407 16995129 ~ 17050056 (-) True G123642
TU155036 lncRNA upstream 235590 17075312 ~ 17075549 (-) True G123646
TU155101 lncRNA upstream 394648 17234370 ~ 17238544 (-) True G123705
AMCG00002490 mRNA downstream 4885 16824229 ~ 16831271 (-) True AMCG00002490
AMCG00002491 mRNA downstream 22884 16792556 ~ 16813272 (-) True AMCG00002491
AMCG00002486 mRNA downstream 82660 16752548 ~ 16753496 (-) True AMCG00002486
AMCG00002488 mRNA downstream 101633 16689836 ~ 16734523 (-) True AMCG00002488
AMCG00002487 mRNA downstream 163577 16658898 ~ 16672579 (-) True AMCG00002487
AMCG00002492 mRNA upstream 7702 16847424 ~ 16848116 (-) True AMCG00002492
AMCG00002503 mRNA upstream 118479 16958201 ~ 16974301 (-) True AMCG00002503
AMCG00002505 mRNA upstream 181697 17021419 ~ 17052806 (-) True AMCG00002505
AMCG00002504 mRNA upstream 223685 17063407 ~ 17071925 (-) True AMCG00002504
AMCG00002508 mRNA upstream 240782 17080504 ~ 17090314 (-) True AMCG00002508
TU154543 other downstream 1889845 14941260 ~ 14946311 (-) True G123263
TU154299 other downstream 3181920 13649228 ~ 13654236 (-) False AMCG00002421
TU154046 other downstream 3806750 13028197 ~ 13029406 (-) False G122862
TU154047 other downstream 3806750 13028197 ~ 13029406 (-) True G122862
TU153859 other downstream 4829805 11995828 ~ 12006351 (-) True AMCG00002368
TU155250 other upstream 1082730 17922452 ~ 17989465 (-) True G123829
TU156333 other upstream 6246272 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 6342199 23181921 ~ 23185168 (-) True AMCG00002629
TU156457 other upstream 7421843 24261565 ~ 24261823 (-) True G124829
TU156479 other upstream 7452065 24291787 ~ 24339566 (-) True G124848

Expression Profile